Query= MSMg01no458_d11.b1 MSMg01no458_d11.b1 CHROMAT_FILE:
MSMg01no458_d11.b1 PHD_FILE: MSMg01no458_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:44 2005
(682 letters)
>mm_chr1_133024663_133025745
Length = 1083
Score = 1183 bits (612), Expect = 0.0
Identities = 641/652 (98%), Gaps = 5/652 (0%)
Strand = Plus / Plus
Query: 31 ataaaatttaaaaaagaaaaaaaa---cgtaaaaacataaaagaatatcttctatcttga 87
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 231 ataaaatttaaaaaagaaaaaaaaacccgtaaaaacataaaagaatatcttctatcttga 290
Query: 88 gagagattgaaaccgagggtaatacgtgagtttcgagtacctctgatgagaatgaagacg 147
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 291 gagagattgaaaccgagggtaatacgtgagtt-cgagtacctctgatgagaatgaaaaca 349
Query: 148 atgcactgacctatgaaaaagtcatttaatgtatactccagatggccaatacaagctggt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atgcactgacctatgaaaaagtcatttaatgtatactccagatggccaatacaagctggt 409
Query: 208 tagacattagcccttgaagcgttcttttaaagtcatataaaaatgttctgccttgttaaa 267
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 410 ttgacattagcccttgaagcgttcttttatagtcatataaaaatgttctgccttgttaaa 469
Query: 268 aaaaaagtctaacaaaaacatatccatcagtgaatgggcttcaattattccgttttccat 327
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aaaaa-gtctaacaaaaacatatccatcagtgaatgggcttcaattattccgttttccat 528
Query: 328 ttgcatgtttgcaaggtaattaaaaatgcatatgatatgtatcagtctctgagtggtcca 387
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 529 ttgcatgtttgcaaggtaattaaaaatacatatgatatgtatcagtctctgagtggtcca 588
Query: 388 ctagctaatcagctttggcaatacactgcacagaggtatactaccactggtttcggacat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctagctaatcagctttggcaatacactgcacagaggtatactaccactggtttcggacat 648
Query: 448 taggttagctttaagcttactggctatcccaacgactggaggcagcttggaacccagtcc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 taggttagctttaagcttactggctatcccaacgactggaggcagcttggaacccagtcc 708
Query: 508 ctggaaagcatttgtagggttaactacccgcttccctggcaccttgtccatggtgagagg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ctggaaagcatttgtagggttaactacccgcttccctggcaccttgtccatggtgagagg 768
Query: 568 tttgggtgtagacttgctaatccaaggatgtcttaatgcttgagccggggtgaggcgggc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tttgggtgtagacttgctaatccaaggatgtcttaatgcttgagccggggtgaggcgggc 828
Query: 628 agaggggtcccactggaggcatcgtttcagaaactctatgaataagtagtca 679
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 829 agaggggtcccactggaggcatcgtttcagaaactctatgaacaagtagtca 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space: 721056
Effective search space used: 721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_d11.g1 MSMg01no458_d11.g1 CHROMAT_FILE:
MSMg01no458_d11.g1 PHD_FILE: MSMg01no458_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:44 2005
(651 letters)
>mm_chr1_133038560_133039610
Length = 1051
Score = 1230 bits (636), Expect = 0.0
Identities = 647/651 (99%)
Strand = Plus / Minus
Query: 1 aggcagacatagttctggagaggtagctgagagttctacatctggagccaccaacagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 aggcagacatagttctggagaggtagctgagagttctacatctggagccaccaacagcag 809
Query: 61 aaagagacaatgagtcactaggcctggcttgagcttctgaaaccttgaaacccactccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aaagagacaatgagtcactaggcctggcttgagcttctgaaaccttgaaacccactccaa 749
Query: 121 ctccaccccccacccctgtgacatatttcctccaataaggccactatgagtctatagggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ctccaccccccacccctgtgacatatttcctccaataaggccactatgagtctatagggg 689
Query: 181 ccattcaaaccaccacagatagagcaccctgctctgctacctatgatagcattggtggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ccattcaaaccaccacagatagagcaccctgctctgctacctatgatagcattggtggtt 629
Query: 241 atacttttgtatgaagctgatacaactcacagaactgtgacctgtagtgaacttaggggc 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atacaactgtatgaagctgatacaactcacagaactgtgacctgtagtgaacttaggggc 569
Query: 301 ttgggatatactttagtggcaagagcatgcttagtgtttaaaaggctctggaatgaattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttgggatatactttagtggcaagagcatgcttagtgtttaaaaggctctggaatgaattc 509
Query: 361 cacgaactacaaaaagaagaagaaaaagaatagttaactttattgcatataaatcaaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cacgaactacaaaaagaagaagaaaaagaatagttaactttattgcatataaatcaaatc 449
Query: 421 tttaaaagaaaaccactgtaggacacagtgacccattcctgtaatctcccaagaaagatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttaaaagaaaaccactgtaggacacagtgacccattcctgtaatctcccaagaaagatt 389
Query: 481 gtctaaattagaccagccctgtctacaaagtgagaccctgtcccaatagatattanatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 388 gtctaaattagaccagccctgtctacaaagtgagaccctgtcccaatagatattaaatta 329
Query: 541 aaatgaatgacattggctggagagatgacaaggtagttaagagcactagctgctcttgga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaatgaatgacattggctggagagatgacaaggtagttaagagcactagctgctcttgga 269
Query: 601 gaggacccacattcaactcaccaaccatctgtaactttagttttcgggaat 651
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaggacccacattcaactcaccaaccatctgtaactttagttttcgggaat 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
