Query= MSMg01no458_d19.b1 MSMg01no458_d19.b1 CHROMAT_FILE:
MSMg01no458_d19.b1 PHD_FILE: MSMg01no458_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:46 2005
(606 letters)
>mm_chr1_108334641_108335646
Length = 1006
Score = 1102 bits (570), Expect = 0.0
Identities = 592/604 (98%), Gaps = 8/604 (1%)
Strand = Plus / Plus
Query: 1 acacacacacacacacacacacacacacacacatttatgctaaggccagagcagccttca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 acacacacacacacacacacacacacacacacattcatgctaaggccagagcagccttca 260
Query: 61 cagtgcccagtccaggagtcagtcctgctgtggaaacaattgatgactgcattctttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgcccagtccaggagtcagtcctgctgtggaaacaattgatgactgcattctttctt 320
Query: 121 ttttaaaccatgtcattaatatcacttttattttacaaattttctagttataatttatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaaaccatgtcattaatatcacttttattttacaaattttctagttataatttatat 380
Query: 181 ttactatatttatatatttataaaattataaatttataagatttatatacttttaaataa 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactatatttata--------aaattataaatttataagatttatatacttttaaataa 432
Query: 241 acattttagtttatcatacaatctaaaaaatatattaaattagtttagctgaagaaaagg 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 433 acattttagtttatcatacaatctaaaaattatattaaattagtttagctgaagaaaagg 492
Query: 301 cctttgataaaaatataacacattttgatgataaaagtcctaaagagactatatggacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cctttgataaaaatataacacattttgatgataaaagtcctaaagagactatatggacat 552
Query: 361 acagcaacataaaaaaactaacctggaacaaacttacggaaaacattaagctgaatagag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 553 acagcaacataaaaaaactaacctggaacaaacttacggaaaacattaagctgaatggag 612
Query: 421 agaaacttaaagtaatttcattaaaatcaggaaccagacaaggtcgtcactctctcaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agaaacttaaagtaatttcattaaaatcaggaaccagacaaggtcgtcactctctcaata 672
Query: 481 cctattcaatatagttctgtatgtcttagctaacaataaagcaactgaaggagatcaaag 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 673 cctattcaatatagttctgtatgtcttagctaacaacaaagcaactgaaggagatcaaag 732
Query: 541 gaagagaaataggaagtaaagaagtcaaagtatcatttataggtgatatgattttattcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaagagaaataggaagtaaagaagtcaaagtatcatttataggtgatatgattttattcc 792
Query: 601 tata 604
||||
Sbjct: 793 tata 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_d19.g1 MSMg01no458_d19.g1 CHROMAT_FILE:
MSMg01no458_d19.g1 PHD_FILE: MSMg01no458_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:46 2005
(247 letters)
>mm_chr1_108499523_108500169
Length = 647
Score = 478 bits (247), Expect = e-139
Identities = 247/247 (100%)
Strand = Plus / Minus
Query: 1 tgtctgagtccgtgtgcctacttttggccttcaggaaggaggagttgttttttaaataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgtctgagtccgtgtgcctacttttggccttcaggaaggaggagttgttttttaaataaa 388
Query: 61 accttgtcccagccctcctgcagcagacgtgaaaagtacactgttttgccttttcttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 accttgtcccagccctcctgcagcagacgtgaaaagtacactgttttgccttttcttgaa 328
Query: 121 ttcaccctcagatgttttcataggcgcttggtcacagcaaagtggtccctgtgtacaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcaccctcagatgttttcataggcgcttggtcacagcaaagtggtccctgtgtacaaac 268
Query: 181 cgcccactctctgaagcatgattgattagcaaagctgctctgctcaagggcagtctgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cgcccactctctgaagcatgattgattagcaaagctgctctgctcaagggcagtctgttt 208
Query: 241 tcccgag 247
|||||||
Sbjct: 207 tcccgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
