BAC Information

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BAC

Clone NameMSMg01-458H05
Chromosome1 (Build37)
Map Location 178,549,665 - 178,704,655
singlet/doubletdoublet
Overlap geneCep170
Upstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneSdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458H05.T7 (MSMg01no458_h05.b1)MSMg01-458H05.TJ (MSMg01no458_h05.g1)
ACCAG544278AG544279
length766754
length of high quality
(start - end)		269 (332 - 600)550 (80 - 629)
definitionCHROMAT_FILE: MSMg01no458_h05.b1 PHD_FILE: MSMg01no458_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:03 2005CHROMAT_FILE: MSMg01no458_h05.g1 PHD_FILE: MSMg01no458_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,704,387 - 178,704,655)(178,549,665 - 178,550,214)
sequence
NTGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGACC
GCGGAATTCCAGCAGCCTCACAAATAGCAGAGAGCACTATTCATGAGATT
CCAACAAAAGACACACCAAGTTCCCATACAGCAGGTGCAGGGCATGCTTC
ATTTACCATTGAATTTGATGACAGTACGCCAGGAAAAGTAACTATTAGAG
ACCATGTGACAAAATTCACTTCTGACCAGCGCCACAAGTCAAAGAAGGCC
TCTCCAGGAACTCAAGACTTGCCAGGAATTCAGACAGGAATGATGGCACC
AGAAAATAAAGTAGCTGACTGGCTATTCTTAAACAACCCTCCTCAGATGG
TGTGGGAAAGAACAGAGGAGGATTCCAAGAGCATTAAAAGTGATGTTCCT
GTGTACTTGAAAAGGTTGAAAGGTAAAATGATCTTCAGAGATTCCTATTG
TATCATAAGTTACCAGACAGACTACTGTTACTTAATTATACACTGGAAAA
TATCTTTTTCAAAATTTACGTTTAATTTTAAAGCTCAAGAGCAAACAGCA
CTGTTTATGTCCAGATTTCTCATTCATATTAGCTTTTCTTTGTTTTCTTG
CCCAAACCACATTGGTTTGGGGATGGCAGGTTACTTATGTCATTTAATCT
CTTTACCTGCCGAAATACATAATCTATTAATTTATCAAAGCAGAATTTTT
TCTGAAAATAATCCCCATTCATTTTCCTTGATTTAAGAAAAATATTTGTA
CCGTTCTTTTTTTCTN

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAAAGCATCGGTCTCCAG
TCAAGGAAAAGATGGTGAATTGCAATGCCATGCGTGTATTGGTGGCATTG
CTGGGAGCATAGCATTGTCAATGGAGTGTCAGTGGAGGGTGGTGGCATTG
CTTATATGGCAGATGGTCTGGCGAGCAGAGCAGATGAACTCAGCAGCAAG
ACACAAATATAATTCAAAAGCATTCAAAAGTTTTCTTCCAGCATTCAAGA
TGCTGCTGCCCACAGTTAGGGTGTATTTTTCTATTTGCTTTAATGTAATC
AAGAAGACCCCTCACAGGTGTATCCAGCAGCTTGTCTCTGAATTGATTCC
GGAGCCAGTCGAGTTGGTATTGATTCCCTTGGAACTTCTGTGATTTTTCT
GAAAGAGGGCAAACCTTGGTCTGCTATAAGGATGAGAGCAGGGGTGGGGG
TGGGGACTACCAGGAGGTTTGGTCTTCATTCATTTAATGACTGAACAAGA
GCTGAAGTTTATAGGAAGCAGACATTCACAGGAAGTATGCATCCCAGTGA
CTTGGCTAGAATACGTTCCTGAAAGGATGGGAGCTATCAGCTCAGTAAAT
GGCTGCTGTTTTGTCCTTGGTAGGATATATTAAATAAACATTATCAGATG
ACAATCTCTGACTTTGGCTGCAACTTTCCCCAGGCCTCCCCACCTTTAAA
CCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_h05.b1 MSMg01no458_h05.b1 CHROMAT_FILE:
MSMg01no458_h05.b1 PHD_FILE: MSMg01no458_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:03 2005
         (269 letters)



>mm_chr1_178704187_178704855
          Length = 669

 Score =  505 bits (261), Expect = e-147
 Identities = 267/269 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaaccctcctcagatggtgtgggaaagaacagaggaggattccaagagcattaaaagt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aacaaccctcctcaaatggtgtgggaaagaacagaggaggattccaagagcattaaaagt 410

                                                                       
Query: 61  gatgttcctgtgtacttgaaaaggttgaaaggtaaaatgatcttcagagattcctattgt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 409 gatgttcctgtgtacttgaaaaggttgaaaggtaaagtgatcttcagagattcctattgt 350

                                                                       
Query: 121 atcataagttaccagacagactactgttacttaattatacactggaaaatatctttttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atcataagttaccagacagactactgttacttaattatacactggaaaatatctttttca 290

                                                                       
Query: 181 aaatttacgtttaattttaaagctcaagagcaaacagcactgtttatgtccagatttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaatttacgtttaattttaaagctcaagagcaaacagcactgtttatgtccagatttctc 230

                                        
Query: 241 attcatattagcttttctttgttttcttg 269
           |||||||||||||||||||||||||||||
Sbjct: 229 attcatattagcttttctttgttttcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no458_h05.g1 MSMg01no458_h05.g1 CHROMAT_FILE:
MSMg01no458_h05.g1 PHD_FILE: MSMg01no458_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:03 2005
         (550 letters)



>mm_chr1_178549465_178550414
          Length = 950

 Score =  994 bits (514), Expect = 0.0
 Identities = 541/550 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaaagcatcggtctccagtcaaggaaaagatggtgaattgcaatgccatgcgtgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaaagcatcggtctccagtcaaggaaaagatggtgaattgcaatgccatgcgtgtat 260

                                                                       
Query: 61  tggtggcattgctgggagcatagcattgtcaatggagtgtcagtggagggtggtggcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtggcattgctgggagcatagcattgtcaatggagtgtcagtggagggtggtggcatt 320

                                                                       
Query: 121 gcttatatggcagatggtctggcgagcagagcagatgaactcagcagcaagacacaaata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gcttatatggcagatggtctggcgagcagagcagatgaactcagcagcaagacacaaaga 380

                                                                       
Query: 181 taattcaaaagcattcaaaagttttcttccagcattcaagatgctgctgcccacagttag 240
            |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gaattcaaaggcattcaaaagttttcttccagcattcaaggtgctgctgcccacagttag 440

                                                                       
Query: 241 ggtgtatttttctatttgctttaatgtaatcaagaagacccctcacaggtgtatccagca 300
           |||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgcattctgctatttgctttaatgtaatcaagaagacccctcacaggtgtatccagca 500

                                                                       
Query: 301 gcttgtctctgaattgattccggagccagtcgagttggtattgattcccttggaacttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttgtctctgaattgattccggagccagtcgagttggtattgattcccttggaacttct 560

                                                                       
Query: 361 gtgatttttctgaaagagggcaaaccttggtctgctataaggatgagagcaggggtgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgatttttctgaaagagggcaaaccttggtctgctataaggatgagagcaggggtgggg 620

                                                                       
Query: 421 gtggggactaccaggaggtttggtcttcattcatttaatgactgaacaagagctgaagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtggggactaccaggaggtttggtcttcattcatttaatgactgaacaagagctgaagtt 680

                                                                       
Query: 481 tataggaagcagacattcacaggaagtatgcatcccagtgacttggctagaatacgttcc 540
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 tataggaagcagaaattcacaggaagtatgcatcccagtgtcttggctagaatacgttcc 740

                     
Query: 541 tgaaaggatg 550
           ||||||||||
Sbjct: 741 tgaaaggatg 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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