BAC Information

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BAC

Clone NameMSMg01-458M18
Chromosome1 (Build37)
Map Location 83,083,349 - 83,083,538
singlet/doubletsinglet
Overlap genenone
Upstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272
Downstream geneCcl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958, 5033414K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458M18.T7 (MSMg01no458_m18.b1)MSMg01-458M18.TJ (MSMg01no458_m18.g1)
ACCAG544542AG544543
length770762
length of high quality
(start - end)
484 (85 - 568)194 (124 - 317)
definitionCHROMAT_FILE: MSMg01no458_m18.b1 PHD_FILE: MSMg01no458_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:29 2005CHROMAT_FILE: MSMg01no458_m18.g1 PHD_FILE: MSMg01no458_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTTACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAACAT
CCGCGGAATTCTCACCTGTTGCCAAACAAATGGNAGAGAAGCACTTGAAA
AAATGTTCAACATCCTTAATCATCATGGACATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCAGAAAACTGGACATAGTACTACCTGTAATATTCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGTAC
CTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTANAAAGAATGAATTTATGAAATTCCT
AGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCATTC
ACAAAGAAACTCACACCATATGTACTCACTGATAAGTGGATATTAGCCCC
AAACTTAGGATACCCCAGATATAAAACATAATTTGGTAAACCCCTGAACC
CCCCAAAAAAAGGAAAACGGAGGGTGGGACCCATGCCCCCTCCTAAATTT
GGGGAAAAAATTCCCCTGGG
AATGCAGTGCGTAGGCCGGGNGGACGCCTGGTTCCATACCGGAGGNGAAC
TATAGAAGGTTACAAAAACATCTTCAGATCTTCTTTAGATCTTTTGAGTT
TTATCTTCCTTAATGATACTCCAATGAAAACTATGGACTAACTCTCAAAG
AAAATAGACACAAACACACAAACCTGCCCTCTCACCTACAACTGCAGCAC
CATGAGAACATTCTTGTCGCCTATCTCTGGGAGTCCCTAGGTACCTAATA
TTATATTAGGTTAATCCTTCAGTTTGTAATTTCTGCAGCTAACACCGAGA
AGGGAGAGCAAAGATTTTTTTATTTATTGAGCTACCCCGAGCAATGCCTA
GGGAAGTTGATAAAACTTGGTCAGCAACAGACAAAAGCAAGATCAGAAAG
CTCATAGTCTAGCAAAGCAGTTAAGTGTAGGAAGAGACCAGGTCACTTTC
GAACTCGGAGGTCGCTTGCAGACTGGCAGTGCGGGTTTGGGCTTGACTTC
TGTGTTGGGTACCTTTTGTCAAATTGACATAAATCATAGTCTTCGGCGGA
AAAGGACACCTCAGTTATAGAACTGCCTCCTTCAAATAGTCCCGTTGAAA
CCTCTGCGGTCTCACATTCTTGATTAAAGATGTATGTTCCCACGCTCTTT
TTTCTGTTTTTTTTGACGCTTCTGAATCAGCCTTCATGTACTTCTCAACA
AATTCTATCTTCTAAATTCCCTTTACTCTCTGCTCTTCTGCCTTTAACCC
CCTCTAGTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_m18.g1 MSMg01no458_m18.g1 CHROMAT_FILE:
MSMg01no458_m18.g1 PHD_FILE: MSMg01no458_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:29 2005
         (194 letters)



>mm_chr1_83083149_83083741
          Length = 593

 Score =  331 bits (171), Expect = 2e-95
 Identities = 186/191 (97%), Gaps = 1/191 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaaactatggactaactctcaaagaaaatagacacaaacacacaaacctgccctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaaaactatggactaactctcaaagaaaatagacacaaacacacaaacctgccctctc 260

                                                                       
Query: 61  acctacaactgcagcaccatgagaacattcttgtcgcctatctctgggagtccctaggta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctacaactgcagcagcatgagaacattcttgtcgcctatctctgggagtccctaggta 320

                                                                       
Query: 121 cctaatattatattaggttaatccttcagtttgtaatttctgcagctaacaccgagaagg 180
           ||||| |  |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 cctaaaaa-atattaggttaatccttccgtttgtaatttctgcagctaacaccgagaagg 379

                      
Query: 181 gagagcaaaga 191
           |||||||||||
Sbjct: 380 gagagcaaaga 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 593
Length adjustment: 8
Effective length of query: 186
Effective length of database: 585
Effective search space:   108810
Effective search space used:   108810
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)