Query= MSMg01no458_n19.b1 MSMg01no458_n19.b1 CHROMAT_FILE:
MSMg01no458_n19.b1 PHD_FILE: MSMg01no458_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:34 2005
(543 letters)
>mm_chr1_68870764_68871706
Length = 943
Score = 1050 bits (543), Expect = 0.0
Identities = 543/543 (100%)
Strand = Plus / Plus
Query: 1 gactgtctcctcacatttttgactgccctgcaatactttattccactttaaaactagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gactgtctcctcacatttttgactgccctgcaatactttattccactttaaaactagctt 260
Query: 61 tgttttccagcttaagagttaaatctggaatacttttctactagagaataaatacatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttttccagcttaagagttaaatctggaatacttttctactagagaataaatacatggt 320
Query: 121 agtccccttgtgcctcttgctcctagaataactcatgccaagaacttctgtttttattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtccccttgtgcctcttgctcctagaataactcatgccaagaacttctgtttttattta 380
Query: 181 cctagcatgtcttgccttcacatactgtttaatacaataagaaaggaaatgtttacaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagcatgtcttgccttcacatactgtttaatacaataagaaaggaaatgtttacaaca 440
Query: 241 gcaaatccttccaatggtgtgtggttgaaattcccaccctccctggcaaattcggcaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaatccttccaatggtgtgtggttgaaattcccaccctccctggcaaattcggcaatt 500
Query: 301 gatttcttatctttctgtttccagtgtaagagcaattactagggaagctttctgacctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttcttatctttctgtttccagtgtaagagcaattactagggaagctttctgacctct 560
Query: 361 gggatcaaatttgacttttaagtttcatagctctttcattcatatccatacttatcttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggatcaaatttgacttttaagtttcatagctctttcattcatatccatacttatcttat 620
Query: 421 ttttatcacagactgatcagttagtatcacactacatgatatgaagtacacaagaagagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttatcacagactgatcagttagtatcacactacatgatatgaagtacacaagaagagt 680
Query: 481 tttgtttatatttttgtaaatatttgtgcttctttttttcttgcaaatggcatgctatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgtttatatttttgtaaatatttgtgcttctttttttcttgcaaatggcatgctatct 740
Query: 541 aga 543
|||
Sbjct: 741 aga 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_n19.g1 MSMg01no458_n19.g1 CHROMAT_FILE:
MSMg01no458_n19.g1 PHD_FILE: MSMg01no458_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:34 2005
(593 letters)
>mm_chr1_69033635_69034627
Length = 993
Score = 1112 bits (575), Expect = 0.0
Identities = 589/594 (99%), Gaps = 2/594 (0%)
Strand = Plus / Minus
Query: 1 atcatttatgcttctattaaataattattataatatcagacaattataaccccatataat 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 829 atcatttatgcttctattaaataattattataatatcagacaattataagcccatataat 770
Query: 61 atctttctttcaaatgtctcctttaaagaaatagtacatttttaaagatacaatcttgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 atctttctttcaaatgtctcctttaaagaaatagtacatttttaaagatacaatcttgtc 710
Query: 121 agtataattgaattaactatgtcgtaaagaatactgtgcaataaaatattgctattggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 agtataattgaattaactatgtcgtaaagaatactgtgcaataaaatattgctattggtt 650
Query: 181 tattattttaaagagcctacaaagataagaactcactttctctgtcttttttggtctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tattattttaaagagcctacaaagataagaactcactttctctgtcttttttggtctgga 590
Query: 241 gattgttgna-tantctaaagttaagaagttttatagaaacttatggtgtgtaacaatgt 299
||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gattggtg-attattctaaagttaagaagttttatagaaacttatggtgtgtaacaatgt 531
Query: 300 cattaagtaaaattctaaatgcatattttgaatttggttccatcctagtataatttaaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cattaagtaaaattctaaatgcatattttgaatttggttccatcctagtataatttaaat 471
Query: 360 cactacagttaccatattttctctaaataccatactcatcagaacaaaggaaatgcctgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 cactacagttaccatattttctctaaataccatactcatcagaacaaaggaaatgcctgt 411
Query: 420 ttttggtgctatttgttgtcttgaagacaaataaaacttacgttttttgatagtcattca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ttttggtgctatttgttgtcttgaagacaaataaaacttacgttttttgatagtcattca 351
Query: 480 tcctaaaccgtgagctttatgctctaatctttcacaactattctacaatgtatgtttctt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcctaaaccgtgagctttatgctctaatctttcacaactattctacaatgtatgtttctt 291
Query: 540 aaatatctttatttagaattctgcattttgtagcacttacagatttatgattgg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaatatctttatttagaattctgcattttgtagcacttacagatttatgattgg 237
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
