BAC Information

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BAC

Clone NameMSMg01-459D11
Chromosome1 (Build37)
Map Location 83,680,177 - 83,680,593
singlet/doubletsinglet
Overlap genenone
Upstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459D11.T7 (MSMg01no459_d11.b1)MSMg01-459D11.TJ (MSMg01no459_d11.g1)
ACCAG544863AG544864
length497745
length of high quality
(start - end)		46 (60 - 105)417 (72 - 488)
definitionCHROMAT_FILE: MSMg01no459_d11.b1 PHD_FILE: MSMg01no459_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:03 2005CHROMAT_FILE: MSMg01no459_d11.g1 PHD_FILE: MSMg01no459_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCGCGAAACATCACTTCAAACGACCGGAATCTTTTTCCAAACCAAGA
AATAGNTAATGCAACCCTTTAGATCTATGTTTTACATTTTATTTCAAACT
ATTATCAACTTTTTGGGCCNTTTTTTTTTCCCCCNNNTATCCAATGGAAA
GTTTAATCTTTTTTTAAAAAACAAAAAAAAACCCCCCCCGGGGAAGGACC
AAATTTAAACTCTTTTTCCCCCCCCCCCAAAACCCCCTTTTAATTAAAAA
TTTAAGGGAACCCCCCCAAAAACTTTTATAAAAACCCCCCCTAAAACCCA
AAAATTTTTTCCCCCCCAACAAAAAACCCCCCCGGCCAAAAAAAAGGTTT
TTGTATTTTTTTTTGGGGGGCCCCCCCCCCAAAAAAAAAAACTTCCCGTC
CCCCCCCCTCTTTTTTTTTTTTTCCCACCACACAAAAANCANGGCCGTCT
CTTTTTCTCTTCCCCTCACCCCAAAACACGTGCCATAGCTCTCTCCC

TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCGATTCAGCATGTCCATTGGCAATGTA
TTTTTAACCAATTATCTTGCTCTATCCTGACAATTGCATTGAGGTCTGTC
ATTGTTAAATGGATGAATATAACTTTAAATCCAGGTCTACAAGTATCAAC
TAGACAATCAAAAATGTCCTAAAATTTTACTTCCTTGGGTGTTTGCTTGT
GACTGGGTTTTAATCACAGACCACTGCAACATCAAATGTGTGAATTCTTC
TTTCTTCACACCTTTTATCTCAATGTCAAGTGTGTGTTCTATAATTCAAT
TAAAATTTGACACTATCTGGATGGTGTTGACATAAGATTTTGCAACTTAC
CAACTCAGTTCACCAGACTACCAGCATTAGAAATGCAATTGAAAATCCAG
GGCTTTGTGTGTGTGTGCATGCATGTTTGCATGCATGTGTATGTGTGTGT
GTTTGTGGCCCAAAAGCCAATGTTAAGAGCCCCCCATTCCCCGTACCCCT
GACTGGATGAATTTACAGATACCTGCTGCTATACCAGCTTTTTATGGGAG
CGGTGCGGAACTGAAGTCTTTTTCTAGGGCCTTTGGATAATTATCTTTTT
TTTGTCCTAAATCTCTCATACACTTTCATCTTCGATATATGGGTCTTTTT
TTTACCTTTCCCCTACTAGTTTTTCCCCCTTACCCTTTTTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_d11.g1 MSMg01no459_d11.g1 CHROMAT_FILE:
MSMg01no459_d11.g1 PHD_FILE: MSMg01no459_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:03 2005
         (417 letters)



>mm_chr1_83680135_83680951
          Length = 817

 Score =  760 bits (393), Expect = 0.0
 Identities = 411/417 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcgattcagcatgtccattggcaatgtatttttaaccaattatcttgctctatcctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttcgattcagcatgtccattggcaatgtatttttaaccaattatcttgctctatcctgac 400

                                                                       
Query: 61  aattgcattgaggtctgtcattgttaaatggatgaatataactttaaatccaggtctaca 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 399 aattgcattgaggtctgtcattgttaaatggatgaacataactttaaatccaggtctaca 340

                                                                       
Query: 121 agtatcaactagacaatcaaaaatgtcctaaaattttacttccttgggtgtttgcttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agtatcaactagacaatcaaaaatgtcctaaaattttacttccttgggtgtttgcttgtg 280

                                                                       
Query: 181 actgggttttaatcacagaccactgcaacatcaaatgtgtgaattcttctttcttcacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 actgggttttaatcacagaccactgcaacatcaaatgtgtgaattcttctttcttcacac 220

                                                                       
Query: 241 cttttatctcaatgtcaagtgtgtgttctataattcaattaaaatttgacactatctgga 300
           |  | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 caatcaactcaatgtcaagtgtgtgttctataattcaattaaaatttgacactatctgga 160

                                                                       
Query: 301 tggtgttgacataagattttgcaacttaccaactcagttcaccagactaccagcattaga 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 159 tggtgttgacataagattttgcaacttatcaactcagttcaccagactaccagcattaga 100

                                                                    
Query: 361 aatgcaattgaaaatccagggctttgtgtgtgtgtgcatgcatgtttgcatgcatgt 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  aatgcaattgaaaatccagggctttgtgtgtgtgtgcatgcatgtttgcatgcatgt 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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