CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACGGTTGCCAGCACCTGGGCAAATATTGCACCATGCCCCGTGGAGA
CCCAGAGATTCCCAAAATGGACAGATACTTTTAAAAAAGGACCTCTAAAC
AGTGTGACTTTGCTGTACTTTACAGGACTCTTAATAATAAGTGCTTTATC
CTTAAGAGGTCTCTTTCCTAGGATGTTATGAAAGAGCTCTGCTGTAATTG
AAACCCACTCCCTTTGTTTCGTGTCTGCAGACATGAAAGGCCATTGACTG
GCACTCACGTTTTAGAGACTCTTTACTTTGACAAAGGATGTTAAGAGAGT
CCTTTAGTATCTAATTCCAGTGTCTTTAACTGTAACCTTTCATCATTACA
CAAGAGGAAGGTTTCTAGACAGGAATGCTGTCATTATGGGTTCCCTAAGA
GCATAGTCTTAAGACCTCTCCGATTTCCAGGCCTTGATGTCCTGAAGAGG
TTTTGACATCCCCACGTCTTGATTTCATCCAACGTTGGGTTTTCCAAAAC
TGTGGTAAAGATGTTTAACATGAGAGCTACCCCCTTAACAGTTTTCCAGT
GTACAGCCCTGCCTTGTTCACTCTAAGAATGCCGAAAGAGACCACACCTC
CCGCACTGATTTCCCTTCGTTCAACTGATATTTTATTTTCGCCCCCGCTT
ACGCCCTGTTGCCCCCACACCTATAATTCTCCCATGATAGCAAAATTCTT
CCCTC

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAGTAAATACCAGGTTTAAGCATGA
AAAGTCAGTTATATTTTCAACATAATCTAACTTTCAAAGAAGTGTAAAAG
ATGCCTAAGTGTTAATATTTTATGTTTCCCTGCTCTCAGCAGTAATTGCT
GCCCATTAAGAGGAACGCTAAGCCATAGCTGTCAGCACTGGCATGGGACC
AAGGAAACACTGAACCTTCACAGAAGGGGGTTAATTGCTACACGAAGAGG
TAATTTATTAAGGAACACTGCAGCCCTCTATGTTTCCCCGTGCGAGGCTG
AACGCAGAAAACGTATGTGAATATTACATTTGATAATCAAGGCCTTTTCT
ATGGGAGACTTCAGAGTTGGCTAAGCTAACCGAAAGGGGGAGTGGGGAGC
ATGCATAACTAAATTCCCAGGCTATTCTCCTCCCTGGCTCTCACAAAGCT
CTCCTTGTTGCTCTTCCAGTCTTGTTGGCCCTCACACTCTCATAAGCTGT
CACACCCTTTACTCCTTTTTGCCCGATGAAAATGGCCCCTCGTTTTCTTC
CACTCTGATGTTGGTCATCTAATGTTCGTGGGCTTTTTACTTTACATGTT
GTCTTCTGTTCTATTTTTTATTTCTACTCTTTATTTGTTTATTCTACTTT
CTTCACTATCTTTTTTTCCCGCCCCCTTTCCATTCCCTTTTATTTCGTTT
ACCATCCTTCTTCCTACCCTTCCT

Query= MSMg01no459_h02.b1 MSMg01no459_h02.b1 CHROMAT_FILE:
MSMg01no459_h02.b1 PHD_FILE: MSMg01no459_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:22 2005
         (447 letters)



>mm_chr1_187476488_187477334
          Length = 847

 Score =  810 bits (419), Expect = 0.0
 Identities = 437/443 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacggttgccagcacctgggcaaatattgcaccatgccccgtggagacccagaga 64
           |||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcacggctggtagcacctgggcaaatattgcaccatgccccatggagacccagaga 264

                                                                       
Query: 65  ttcccaaaatggacagatacttttaaaaaaggacctctaaacagtgtgactttgctgtac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcccaaaatggacagatacttttaaaaaaggacctctaaacagtgtgactttgctgtac 324

                                                                       
Query: 125 tttacaggactcttaataataagtgctttatccttaagaggtctctttcctaggatgtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttacaggactcttaataataagtgctttatccttaagaggtctctttcctaggatgtta 384

                                                                       
Query: 185 tgaaagagctctgctgtaattgaaacccactccctttgtttcgtgtctgcagacatgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaaagagctctgctgtaattgaaacccactccctttgtttcgtgtctgcagacatgaaa 444

                                                                       
Query: 245 ggccattgactggcactcacgttttagagactctttactttgacaaaggatgttaagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggccattgactggcactcacgttttagagactctttactttgacaaaggatgttaagaga 504

                                                                       
Query: 305 gtcctttagtatctaattccagtgtctttaactgtaacctttcatcattacacaagagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcctttagtatctaattccagtgtctttaactgtaacctttcatcattacacaagagga 564

                                                                       
Query: 365 aggtttctagacaggaatgctgtcattatgggttccctaagagcatagtcttaagacctc 424
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggtttctagacaggcatgctgtcattatgggttccctaagagcatagtcttaagacctc 624

                                  
Query: 425 tccgatttccaggccttgatgtc 447
           || ||||||||||||||||||||
Sbjct: 625 tcagatttccaggccttgatgtc 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no459_h02.g1 MSMg01no459_h02.g1 CHROMAT_FILE:
MSMg01no459_h02.g1 PHD_FILE: MSMg01no459_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:22 2005
         (340 letters)



>mm_chr1_187657905_187658644
          Length = 740

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtaaataccaggtttaagcatgaaaagtcagttatattttcaacataatctaacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 540 taagtaaataccaggtttaagcatgaaaagtcagttatattttcaacgtaatctaacttt 481

                                                                       
Query: 61  caaagaagtgtaaaagatgcctaagtgttaatattttatgtttccctgctctcagcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 caaagaagtgtaaaagatgcctaagtgttaatattttatgtttccctgctctcagcagta 421

                                                                       
Query: 121 attgctgcccattaagaggaacgctaagccatagctgtcagcactggcatgggaccaagg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attgctgcccattaagaggaatgctaagccatagctgtcagcactggcatgggaccaagg 361

                                                                       
Query: 181 aaacactgaaccttcacagaagggggttaattgctacacgaagaggtaatttattaagga 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaacactgagccttcacagaagggggttaattgctacacgaagaggtaatttattaagga 301

                                                                       
Query: 241 acactgcagccctctatgtttccccgtgcgaggctgaacgcagaaaacgtatgtgaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acactgcagccctctatgtttccccgtgcgaggctgaacgcagaaaacgtatgtgaatat 241

                                                   
Query: 301 tacatttgataatcaaggccttttctatgggagacttcag 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tacatttgataatcaaggccttttctatgggagacttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)