Query= MSMg01no459_i23.b1 MSMg01no459_i23.b1 CHROMAT_FILE:
MSMg01no459_i23.b1 PHD_FILE: MSMg01no459_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:31 2005
(402 letters)
>mm_chr1_40279513_40280313
Length = 801
Score = 717 bits (371), Expect = 0.0
Identities = 394/402 (98%), Gaps = 1/402 (0%)
Strand = Plus / Minus
Query: 1 gagggccttccagggaagaaccgaggaagtgctcctcactggtccatcccaggctatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gagggccttccagggaagaaccgaggaagtgctcctcactggtccatcccaggctatctc 410
Query: 61 ggcactttaaagagatggagccaaggtatctttccatcatttaaagctaggctgggagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggcactttaaagagatggagccaaggtatctttccatcatttaaagctaggctgggagag 350
Query: 121 tatgggtttcaatgatcagaatccccgggtgtctgacaccccaagcccacagcagtgaca 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 349 tatgggtttcaatgatcagaatccccgagtgtctgacaccccaagcccacagcagtgaca 290
Query: 181 ggggaagagcgagagggagcacgctgcggaaaaggagcctccctgcatttcctccgcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ggggaagagcgagagggagcacgctgcggaaaaggagcctccctgcatttcctccgcagg 230
Query: 241 aacagtgcggattcagttccagtcaccagcatctcctgacctctcctcccttcctccagt 300
|||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 229 aacagtgc-gagccagttccagtcaccagcttctcctgacctctcctcccttcctccagt 171
Query: 301 cctttcccttacacccttcccagtcctcctgaatcttctcacttctgctccctcctctgc 360
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 170 cctttcccttacacccttcccagtcctcccgaaccttctcacttctgctccctcctctgc 111
Query: 361 tttcatttcttcctggnactccctccccctcttctcccacct 402
|||||||||||||||| |||||||||||||||||||||||||
Sbjct: 110 tttcatttcttcctggtactccctccccctcttctcccacct 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 801
Length adjustment: 9
Effective length of query: 393
Effective length of database: 792
Effective search space: 311256
Effective search space used: 311256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no459_i23.g1 MSMg01no459_i23.g1 CHROMAT_FILE:
MSMg01no459_i23.g1 PHD_FILE: MSMg01no459_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:31 2005
(331 letters)
>mm_chr1_40093106_40093836
Length = 731
Score = 625 bits (323), Expect = 0.0
Identities = 329/331 (99%)
Strand = Plus / Plus
Query: 1 tttcttactgtatagcccagggtagtctcaaatcctccatcctcttgcctgagcctcaga 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tttcttactgtatagcccagggtagtctcaaattctccatcctcttgcctgagcctcaga 260
Query: 61 agtgtagttacatgtgtgcactatccaccctggctgagattttattaatatttctattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtagttacatgtgtgcactatccaccctggctgagattttattaatatttctattta 320
Query: 121 ttccttgatatgttaatgcatttatttggtgtattttgagcagagccatctacacatccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccttgatatgttaatgcatttatttggtgtattttgagcagagccatctacacatccc 380
Query: 181 ttttctgatcttattttaatggcaaatacgttgtagacttgcatgtgatattcagggtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttctgatcttattttaatggcaaatacgttgtagacttgcatgtgatattcagggtga 440
Query: 241 cgggattttttttttttaatttctttggttagtcctataaattctaaatctactttctcc 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgggatttttttttttaaatttctttggttagtcctataaattctaaatctactttctcc 500
Query: 301 tgttctgaacaccaatgtcattccctggtca 331
|||||||||||||||||||||||||||||||
Sbjct: 501 tgttctgaacaccaatgtcattccctggtca 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
