ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGTCTTCCACCGTGCAAGGCGGTGGCTGAAACAGCTTCCTATATATCC
TGTCATCATAAGCCTCTCCCTGATTTCTTCCCCTGCTCCCACTACCTACA
GCAAATCCCAGAGCCTTCCTCTACTCCCCTAGCCTGGCAGACATTTATGA
GGCTCATCATGGGGAAACACTGGGGCCTGTTCTTGGCTCCCCCTCCTTTA
GCACGGAGATATTTTGTCTTCCTCCCTCACTCTCACCTCGTGGACGAAGG
TCTGTTATCTTATACCCTGTTTATGGGCTGTTGGGATTTTTTCCAACAAC
CTGAAATGAATCTGCAAGGCCCCACAGGTAGTGCTGCTTGCACCCCTGGC
CATAAAGTATGGCTGGCTCTTTCATCTGCCATTACTTATATCATAAACGA
GTGGGCAGAAAGACGGGGAAACAGCTGCCCTAAACCAGTCCAGACTTATT
AAGAAGATGAAGAGGAGGAGGACCAAGAGGAATAGGAGGAAGGGGAGGAA
TAGGATGCGCCCCTCTCTTCTTCTTCCTCCCCTTTCGCTTTTATTTACAT
GCTTTTTCCTTCATCCTCCTATAGCCAGACTCCTCCTTCTTTTTTCCCTT
ATTTCATTCTTCCACTCCTTCTTCTTCGTTTTTTTCCTCTCCTCTCCTTA
TACCCTCTTTCCTTTTTTACCCTGAGGCCTTTACCGCCTTTTTTCCCCCT
CCGTGTTATCTTACCATCC

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTATCGGATCAACATAAAGAATTGAGAA
GTTTTTCTTCTGAGCCTTGCTTACAAGAGCAAATCTGTCGTGGATTATTT
TAATCCGAGGCAGATCATCTCAGGAAGATCTCCTGCTAGTAGTTTGCCAG
TTCTATGATGGATTCTGACACAAATTAAATAAAACATTAAAAAATAACAT
ATACTATGACTAATTAGGCTTCATTCCAGTGATGTAAGGAAGGTTCAATT
TATACAAATCAGTAAATTTTATATAGCACACAGACTCAAGAACAGAAATT
ATGTGAACATCTCAGTACATACATAAAAAGTCTTTGGTAAAATTCAGAAT
TCCTTCACAATAAAATCCATAAAGAAAATAGGAATAGAAAGAACATACCT
CAACATAATAAAGGCTATATTTGGCAAATCTATTGTTAACATTATATTAA
AGCATTTCCTCTCAAAATTAAGATAAAGGAAAAAGTGGGCTCTCTGCCTT
AGTTGATACAGGATTTTGAATCTTACAGTATTAATTCCAATAATTAATTT
TTTATTAATTATTTTATTGGGAGAAACTCATTTTTCTCCTTTGGCAAATT
TTAGCCCTATGCTTCCGGAGAAAAAGCTTTCCTTGGAAATTTTTCTTTTG
ATCTCACCCTTTCTCAAGGCTAAGGGTCTAAAAAATCTTCCCCCCCCCCT
CAACTATAAAAAAAAAAAATTTTTGTTTTT

Query= MSMg01no459_m16.b1 MSMg01no459_m16.b1 CHROMAT_FILE:
MSMg01no459_m16.b1 PHD_FILE: MSMg01no459_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:51 2005
         (438 letters)



>mm_chr1_169750513_169751351
          Length = 839

 Score =  801 bits (414), Expect = 0.0
 Identities = 431/438 (98%), Gaps = 5/438 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtcttcc--accgtgcaaggcggtggctgaaacagcttcctatatatcctg 61
           ||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtc--ccctaccgtgcaaggcggtggctgaaacagcttcctatatatcctg 261

                                                                       
Query: 62  tcatcataagcctctccctgatttcttcccctgctcccactacctacagcaaatcccaga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcatcataagcctctccctgatttcttcccctgctcccactacctacagcaaatcccaga 321

                                                                       
Query: 122 gccttcctctactcccctagcctggcagacatttatgaggctcatcatggggaaacactg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gccttcctctactcccctagcctggcagacatttatgaggctcatcatggggaaacactg 381

                                                                       
Query: 182 gggcctgttcttggctccccctcctttagcacggagatattttgtcttcctccctcactc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggcctgttcttggctccccctcctttagcacggagatattttgtcttcctccctcactc 441

                                                                       
Query: 242 tcacctcgtggacgaaggtctgttatcttataccctgtttatgggctgttgggatttttt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcacctcgtggacgaaggtctgttatcttataccctgtttatgggctgttgggatttttt 501

                                                                       
Query: 302 ccaacaacctgaaatgaatctgcaaggccccacaggtagtgctgcttgca-cccctggcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 502 ccaacaacctgaaatgaatctgcaaggccccacaggtagtgctgcttgcttcccctggcc 561

                                                                       
Query: 361 ataaagtatggctggctctttcatctgccattacttatatcataaacgagtgggcagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ataaagtatggctggctctttcatctgccattacttatatcataaacgagtgggcagaaa 621

                             
Query: 421 gacggggaaacagctgcc 438
           |||| |||||||||||||
Sbjct: 622 gacgtggaaacagctgcc 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 839
Length adjustment: 9
Effective length of query: 429
Effective length of database: 830
Effective search space:   356070
Effective search space used:   356070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)