Query= MSMg01no459_n03.b1 MSMg01no459_n03.b1 CHROMAT_FILE:
MSMg01no459_n03.b1 PHD_FILE: MSMg01no459_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:53 2005
(380 letters)
>mm_chr1_193431590_193432371
Length = 782
Score = 712 bits (368), Expect = 0.0
Identities = 378/382 (98%), Gaps = 2/382 (0%)
Strand = Plus / Minus
Query: 1 tactgccctgagttcaaggcacacctgcactacacagtcacactctgtctcaaaagaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tactgccctgagttcaaggcacacctgcactacacagtcacactctgtctcaaaagaaaa 586
Query: 61 caacaaaagttactggtactgccttaattttaaatattttttgtagtactgtgatgaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 caacaaaagttactggtactgccttaattttaaatattttttgtagtactgtgatgaaag 526
Query: 121 ctagggtgttctacatgttgggcaaacactgtacattgcactatatccccagtcctgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ctagggtgttctacatgttgggcaaacactgtacattgcactatatccccagtcctgcag 466
Query: 181 aattacgttaacctgtttgctttt--aataaagtccaacattagtgctggcattcttagg 238
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 465 aattacgttaacctgtttgcttttcaaataaagtccaacattagtgctggcattcttagg 406
Query: 239 tatctgccaacagactatttcctagtcatttacagcaggaaaaagcagttccttaccaga 298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tatctgccaacagactagttcctagtcatttacagcaggaaaaagcagttccttaccaga 346
Query: 299 agttcctgttgcttgtatgtggctgatcgtccaatcaccttgtagagctccacgaggtcc 358
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agttcctgttgcttgtctgtggctgatcgtccaatcaccttgtagagctccacgaggtcc 286
Query: 359 ccaagcattccatcgcccagta 380
||||||||||||||||||||||
Sbjct: 285 ccaagcattccatcgcccagta 264
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 782
Length adjustment: 9
Effective length of query: 371
Effective length of database: 773
Effective search space: 286783
Effective search space used: 286783
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no459_n03.g1 MSMg01no459_n03.g1 CHROMAT_FILE:
MSMg01no459_n03.g1 PHD_FILE: MSMg01no459_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:53 2005
(363 letters)
>mm_chr1_193227683_193228445
Length = 763
Score = 656 bits (339), Expect = 0.0
Identities = 357/363 (98%)
Strand = Plus / Plus
Query: 1 attttagaagaggttagatctagaagagatactgtctccctcggaacactatttgatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttagaagaggttagatctagaagagatactgtctccctcggaacactatttgatgag 260
Query: 61 tgccaagccatatagtggtatagccacctatcaggtacccataatcctggaagtaacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccaagccatatagtggtatagccacctatcaggtacccataatcctggaagtaacccc 320
Query: 121 aattaaactggatgtttaccacattagacttgcgggaaatcatttcttctgtcgtacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aattaaactggatgtttaccacattagacttgcgggaaatcatttcttctgtcatacatg 380
Query: 181 gctctctctctatctaccttaaatagaaatcaaattcctaggaaaaggtacaagcagtga 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gctctctctctatctaccttaaatagaaatcaaattcctaggaaaagttacaagcagtga 440
Query: 241 gaaacaaaaggcaaaaacaaaacccaaagctcctaacagtggtgctctagtgttgagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gaaacaaaaggcaaaaacaaaacccaaagctcctaacagtggtgctctaatgttgagaca 500
Query: 301 gcagtggctacgcaggaggtgttgggatccacagctctgggtgatgggggagggaaggct 360
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 gcagtggctacacaggaggtgttgggatccacagctccaggtgatgggggagggaaggct 560
Query: 361 ctg 363
|||
Sbjct: 561 ctg 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space: 266916
Effective search space used: 266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
