XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTGATTCTAAATTATTTTTTAATACCATTGGGCAATTCTTGAAGCTACCT
AATTAGACTCCTGGTCATTATATGTTCTCTCACTGCTTTTCTTTGCAGAG
GAGGTATCTGCAAGGATAGTTCAAGTAGTCACAGCTGAAGCTGTAGCAGT
CCTGAAAGGTGAACAAGAGAAGGAAGCCCAACACAAGGACCAGCCTGCAG
CTCTGCCTCTAGGTAAATGAGAAGAGCCTAACACAGGGCAAGCCTTTGAT
GCCCCTCGTCCCAGTATAAAGTATACATGCTGAAGAGATATATTCTACTT
TGTACATACTTTGTGTATATGTCATTCACCTGTCACCTCTACTAGAAGCA
GACAGGCCTGCCTGTTGAGCCCTCAGTGGTTTCACTGGGGTGTTTTGGCA
GGTTTTAGGGTGAAAACCTGGGTGTTAGATGTGATGGTCCTTCCTTTTAT
TTACTAAATAGGGATTTTGATGAGTCCCTGCCCCCAANAAAGTGAACTGA
AACTTTTCATGCAAATGAAAGGTTCTGCTCTTGGATTCCTCCCCCCCCTC
TTGAAACTAAAAAATAACCCCCCGCGGATTTTTTTTCACCCGAAAAAAGA
ACCCTGGGTTTTATAATTGTTTAAGCATTTTATATACCTTTTCCCTCCCC
CCTTCTATCATCTTTCACCCCGTGGTTTTTTTCCCCTCCCCTTTTTAAAA
TTTACACATTGTCGTTTGCCCCTCCCCTGTCCCTTTTTATACTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGGGGTCGGCAACCCTATAGG
TGGAAAAAACAATATGAACTAACCAGTACCCCTGAGCTCGTAACTCTAGC
TGCATATGTATCAGAAGTTGGCCTAGTCAGCCATCATTGGGAAGAGAGGC
CCCTTGGTCTAGCAAACTTTATATGCTTCAGTACGGGGGAACACCAGGGC
TAAGAAGTGGGAGTCAGTGGGCAGGGGAATGGGGGTTGGGAGNNNTNNNN
NNNNNNNNNTTTTTTTTTTTNNNNNNNNNTNNNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNNNNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTT
NNNNTTTTTTTTTTTTTTTTNNTTTNNTTTTTTTTTTTTTNTTNTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTCT
TTTTTTTTTTTTTTTTTTTNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTN
NTTTNTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTNNTNNTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNNTN
NNNNTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTNTT
TTTTTTTTTTTTTTTNTTTTTTTTTNT

Query= MSMg01no459_n20.b1 MSMg01no459_n20.b1 CHROMAT_FILE:
MSMg01no459_n20.b1 PHD_FILE: MSMg01no459_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:56 2005
         (433 letters)



>mm_chr1_66445653_66446486
          Length = 834

 Score =  816 bits (422), Expect = 0.0
 Identities = 428/430 (99%), Gaps = 1/430 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgattctaaa-ttattttttaataccattgggcaattcttgaagctacctaa 63
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgatcctaaaattattttttaataccattgggcaattcttgaagctacctaa 264

                                                                       
Query: 64  ttagactcctggtcattatatgttctctcactgcttttctttgcagaggaggtatctgca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagactcctggtcattatatgttctctcactgcttttctttgcagaggaggtatctgca 324

                                                                       
Query: 124 aggatagttcaagtagtcacagctgaagctgtagcagtcctgaaaggtgaacaagagaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggatagttcaagtagtcacagctgaagctgtagcagtcctgaaaggtgaacaagagaag 384

                                                                       
Query: 184 gaagcccaacacaaggaccagcctgcagctctgcctctaggtaaatgagaagagcctaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagcccaacacaaggaccagcctgcagctctgcctctaggtaaatgagaagagcctaac 444

                                                                       
Query: 244 acagggcaagcctttgatgcccctcgtcccagtataaagtatacatgctgaagagatata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagggcaagcctttgatgcccctcgtcccagtataaagtatacatgctgaagagatata 504

                                                                       
Query: 304 ttctactttgtacatactttgtgtatatgtcattcacctgtcacctctactagaagcaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctactttgtacatactttgtgtatatgtcattcacctgtcacctctactagaagcaga 564

                                                                       
Query: 364 caggcctgcctgttgagccctcagtggtttcactggggtgttttggcaggttttagggtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caggcctgcctgttgagccctcagtggtttcactggggtgttttggcaggttttagggtg 624

                     
Query: 424 aaaacctggg 433
           ||||||||||
Sbjct: 625 aaaacctggg 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space:   349800
Effective search space used:   349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)