BAC Information

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BAC

Clone NameMSMg01-460D01
Chromosome1 (Build37)
Map Location 106,688,980 - 106,689,132
singlet/doubletsinglet
Overlap geneCdh20
Upstream geneLOC383546, LOC100041134
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460D01.T7 (MSMg01no460_d01.b1)MSMg01-460D01.TJ (MSMg01no460_d01.g1)
ACCAG545606AG545607
length706721
length of high quality
(start - end)
136 (171 - 306)153 (225 - 377)
definitionCHROMAT_FILE: MSMg01no460_d01.b1 PHD_FILE: MSMg01no460_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:22 2005CHROMAT_FILE: MSMg01no460_d01.g1 PHD_FILE: MSMg01no460_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
GATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGGCACATGCT
TTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTT
TATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCA
TCCCTGAAATAAAACCTACTTGATCAGGATGGATGATTGCTTTAATGTGT
TCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATT
CATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGGTGTGTCTTTCTGTG
TGTTACGTATCACAGTAATAGTGGCTTCATACTATGAGTTGGGTAGAGTA
CCTTCTACTTCTATTTTGTGAAATAGATTGTGCCGAATTGTAATTAAATC
TTCTTTGAAGGTCTGGTAGAAATCTGCACTACTCCCATCTGGGCCTGACC
TTTTTTTGACTGCTACACTATTAGTAACTGCTTCTAATTCTTTATGGGAT
ATGGGACTGATGAGATGGCCTACTTGATCCTGATTCAACTTTGGTACATG
GTATCTGTCCAAAAAATTGTTCGTTTCGTCCAGGTTTTCCAGATTTGTTG
AAGATAGCCTTTTGAACAAGGATCTGATGTCGTTTTGTATTTCCTCACAA
TCAGTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACAGCTGAGACCCCGTGAAAGACTGGTGTGG
CTACCTAGAATTTGACCCGGTATAAAGGGGCTAAGGGATGCAAAGTAATT
CCCTGATATATCCACTGATAGAGGACTAACTCCTTCCCTATTCTCTGGGC
TTATTCATTCCCTTTGGCAGAGCAAATCCTCCACACATAGCCAATTATCA
GTTTAAATCAATTATCTTTGCTTTGTGACACTGGGCACAAGAGGAGACAA
AACACTAAATAAACTCTGCATTCTAGCTTAACAACTACAAAAGATGATAT
GCAGACTCATTTACAAAAGATGGAAGACACATAGATACAGACTTCTGCAC
TAGCTAGCCACACTTTCTCTGGATGCAGGCACAGAAGGTGCTGCTTCAAA
TAAAGCATAAGTACCGCTGCTGACAGGAGTCACCTCGTTGGATATGATGT
CACTCTTGAAATTGAGGATGAGCTTGAAGAGCAGGGATTTACCCCTCTAA
TGATAGAGGCTGGATAGCTGAGAACCTCAGGCCCTATTCTTATACTCCTG
TGGAGATGACTTCATCTCTTAGAGCAAGTTCAGGCATTTGATAAGTAGAA
TTAACACTGCTAGAACCCAAGGAAAGACACTTTATCATCTAGAAAAGCAT
TTTCTGCCTTCCCCAATACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_d01.g1 MSMg01no460_d01.g1 CHROMAT_FILE:
MSMg01no460_d01.g1 PHD_FILE: MSMg01no460_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:22 2005
         (153 letters)



>mm_chr1_106688780_106689332
          Length = 553

 Score =  265 bits (137), Expect = 9e-76
 Identities = 149/153 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcctccacacatagccaattatcagtttaaatcaattatctttgctttgtgacactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aatcctccacacatagccaattatcagtttaaatcaattatctttgctttgtggcactgg 260

                                                                       
Query: 61  gcacaagaggagacaaaacactaaataaactctgcattctagcttaacaactacaaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gcacaagaggagacaaaacactaaataaactctgcattctagcttaacaacaacaaaaga 320

                                            
Query: 121 tgatatgcagactcatttacaaaagatggaaga 153
           ||| ||||||||||||||| |||||||||||||
Sbjct: 321 tgaaatgcagactcatttagaaaagatggaaga 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)