BAC Information

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BAC

Clone NameMSMg01-460H19
Chromosome1 (Build37)
Map Location 69,041,205 - 69,193,661
singlet/doubletdoublet
Overlap geneErbb4, LOC667842
Upstream genenone
Downstream geneEG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460H19.T7 (MSMg01no460_h19.b1)MSMg01-460H19.TJ (MSMg01no460_h19.g1)
ACCAG545833AG545834
length731714
length of high quality
(start - end)		419 (68 - 486)537 (72 - 608)
definitionCHROMAT_FILE: MSMg01no460_h19.b1 PHD_FILE: MSMg01no460_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:45 2005CHROMAT_FILE: MSMg01no460_h19.g1 PHD_FILE: MSMg01no460_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,193,243 - 69,193,661)(69,041,205 - 69,041,741)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGATTTCCAGAATCAGTAGGGCTCTGATTTAGGTGACTTCTCTTGGG
ATCTTTTCCTTCAGTTGGTTTGTCTTGTCCAACTTTGATGTGATAGCTTT
TGTTTATCTTATTTTATATATTCTATTTTATTTTGTCAATTTTTGAATGA
ATGAATGAATGAATGAATGATAATCTAGCCATGAAGTAAAGGTTAACAAC
TGAACTGTCATGTACACACTGAGTTGCAGGAAAAGGGAAGCATCACTTTT
TCTAATACATTGACACTGGGTGTATCAACCACTCCAGGACATATCTCTTG
TTCATAAGTAGTTCACCAACATACAGTGCATTCCTCAGTATTTTGTGTGC
TTTTAGTTGATTACAGTTTGATGAGGTTTTTTATTTGTTTCTTTTGGGAT
GTGCTTTTATATTGTTGTCTTGGTTTTGGGGAGTTTTGTGGTTGNATTGN
NTTTTTTTNNTTTTTTTNTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTT
TTTNTTTTTTNTTTTTTTTNNTTTTTNNTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTNTTTTTTTTTTTTTTTNCCTTTTTTTTTTNNTTTTTGTTTTTTCTTT
TTTNTNTGTTTTTTCTTTCTTCTCTCTTTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAAAACTTTCAAAGGAAAACCCAACACC
ACATAGTTTGAACTGATGAACACCAGAAATCTATATTATCAAAGAATGAA
AAGAGTTAACAATTAAATACAATAGATTGGCATTTATCCTAATTCTGTTT
GCTATCTTAAGCTTAGCATTTTGTCCCACAGTATATCCTATTTTATTTTT
GGAGCTACAAAATAGGAGTCTCTGAAATTTCATTCTATCTACTCATGTAT
CTTTGACTGTAGATGACATTTGGGGGAGTTTTGCCTTCAAATACATGTTA
GAAGAAGTATCTTAGGTCCTGGTAATTTAATGTACAAAGAGGAACTCTCT
GTAAGTCTAAAGGAAACTACAAAAATAGGTTCTCTTTAGATGGAAAATAT
GACCACAGATCTGGAACGAGCATGCCCACTCACTCTGAGAAGATGAAATG
ACCAATTTCTTGGTGAAAATAGGAGCTGAACATATGGCTAAAAGCTGTAT
TAGAGAGCAAATTACTACTACTTACGTGCTGTTACAAATTGCAGATAAAA
GATGATTATACCTATTAGAGTTATCTAGTTTTCATTATAAGGGATAAATG
ATTTAAGATTATAGAAAAAGCCGGCTGAATGAAAAGTACAGGACAGGGCC
CTTAATGAAGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_h19.b1 MSMg01no460_h19.b1 CHROMAT_FILE:
MSMg01no460_h19.b1 PHD_FILE: MSMg01no460_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:45 2005
         (419 letters)



>mm_chr1_69192890_69193708
          Length = 819

 Score =  810 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtagggctctgatttaggtgacttctcttgggatcttttccttcagttggtttgtcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 agtagggctctgatttaggtgacttctcttgggatcttttccttcagttggtttgtcttg 713

                                                                       
Query: 61  tccaactttgatgtgatagcttttgtttatcttattttatatattctattttattttgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tccaactttgatgtgatagcttttgtttatcttattttatatattctattttattttgtc 653

                                                                       
Query: 121 aatttttgaatgaatgaatgaatgaatgaatgataatctagccatgaagtaaaggttaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aatttttgaatgaatgaatgaatgaatgaatgataatctagccatgaagtaaaggttaac 593

                                                                       
Query: 181 aactgaactgtcatgtacacactgagttgcaggaaaagggaagcatcactttttctaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aactgaactgtcatgtacacactgagttgcaggaaaagggaagcatcactttttctaata 533

                                                                       
Query: 241 cattgacactgggtgtatcaaccactccaggacatatctcttgttcataagtagttcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cattgacactgggtgtatcaaccactccaggacatatctcttgttcataagtagttcacc 473

                                                                       
Query: 301 aacatacagtgcattcctcagtattttgtgtgcttttagttgattacagtttgatgaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aacatacagtgcattcctcagtattttgtgtgcttttagttgattacagtttgatgaggt 413

                                                                      
Query: 361 tttttatttgtttcttttgggatgtgcttttatattgttgtcttggttttggggagttt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tttttatttgtttcttttgggatgtgcttttatattgttgtcttggttttggggagttt 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no460_h19.g1 MSMg01no460_h19.g1 CHROMAT_FILE:
MSMg01no460_h19.g1 PHD_FILE: MSMg01no460_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:45 2005
         (537 letters)



>mm_chr1_69041005_69041941
          Length = 937

 Score = 1038 bits (537), Expect = 0.0
 Identities = 537/537 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaactttcaaaggaaaacccaacaccacatagtttgaactgatgaacaccagaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaaactttcaaaggaaaacccaacaccacatagtttgaactgatgaacaccagaaatc 260

                                                                       
Query: 61  tatattatcaaagaatgaaaagagttaacaattaaatacaatagattggcatttatccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatattatcaaagaatgaaaagagttaacaattaaatacaatagattggcatttatccta 320

                                                                       
Query: 121 attctgtttgctatcttaagcttagcattttgtcccacagtatatcctattttatttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctgtttgctatcttaagcttagcattttgtcccacagtatatcctattttatttttg 380

                                                                       
Query: 181 gagctacaaaataggagtctctgaaatttcattctatctactcatgtatctttgactgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagctacaaaataggagtctctgaaatttcattctatctactcatgtatctttgactgta 440

                                                                       
Query: 241 gatgacatttgggggagttttgccttcaaatacatgttagaagaagtatcttaggtcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgacatttgggggagttttgccttcaaatacatgttagaagaagtatcttaggtcctg 500

                                                                       
Query: 301 gtaatttaatgtacaaagaggaactctctgtaagtctaaaggaaactacaaaaataggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaatttaatgtacaaagaggaactctctgtaagtctaaaggaaactacaaaaataggtt 560

                                                                       
Query: 361 ctctttagatggaaaatatgaccacagatctggaacgagcatgcccactcactctgagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctttagatggaaaatatgaccacagatctggaacgagcatgcccactcactctgagaa 620

                                                                       
Query: 421 gatgaaatgaccaatttcttggtgaaaataggagctgaacatatggctaaaagctgtatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgaaatgaccaatttcttggtgaaaataggagctgaacatatggctaaaagctgtatt 680

                                                                    
Query: 481 agagagcaaattactactacttacgtgctgttacaaattgcagataaaagatgatta 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagagcaaattactactacttacgtgctgttacaaattgcagataaaagatgatta 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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