Query= MSMg01no460_i03.b1 MSMg01no460_i03.b1 CHROMAT_FILE:
MSMg01no460_i03.b1 PHD_FILE: MSMg01no460_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:46 2005
(597 letters)
>mm_chr1_77140262_77141255
Length = 994
Score = 1085 bits (561), Expect = 0.0
Identities = 587/601 (97%), Gaps = 11/601 (1%)
Strand = Plus / Plus
Query: 1 tagaaaacatataataaagcattatagaaaagaaaataaaaactactattgactggtagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tagaaaacatataataaagcattatagaaaagaaaataaaaactactattgactgatagc 260
Query: 61 ttttttcctttggaactattattttgaggttaagagaccaaaaatgactttgaggaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttcctttggaactattattttgaggttaagagaccaaaaatgactttgaggaagct 320
Query: 121 attacttaagccaaaagtttcattttgcaagatagaaataggttatcacattgaaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attacttaagccaaaagtttcattttgcaagatagaaataggttatcacattgaaatatt 380
Query: 181 tggaagatatatatatatatacacatatacattttaaatttaaacagggagaagttgcat 240
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tggaagatatatatatata--cacatacacattttaaatttaaacagggagaagttgcat 438
Query: 241 ttctctgtgtttttg----agctgtctttttacacagcagcttttgttgttcacagtgat 296
||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttctctgtg-----gcaggagctgtctttttacacagcagcttttgttgttcacagtgat 493
Query: 297 tgtatggcagactggtgccccagattttagaaaataaaaaacaaaatataatcttgcagt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgtatggcagactggtgccccagattttagaaaataaaaaacaaaatataatcttgcagt 553
Query: 357 catttacttcctagatgaggaacaggaacacaacccactgagtttggtattttggagtct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 catttacttcctagatgaggaacaggaacacaacccactgagtttggtattttggagtct 613
Query: 417 cagaagtcatataccttcccatagagtaagcaacaggaggaaacaggaactatccaactg 476
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 614 cagaagtcatataccttcccatagagtaagcaacaggaggaaacaggagctatccaactg 673
Query: 477 ttttcatcattttctttaccttcagggaagaaaggatacaaagacaagacaaaaatttta 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttttcatcattttctttaccttcagggaagaaaggatacaaagacaagacaaaaatttta 733
Query: 537 tgtcttattgaaaatatggtataagaagtaaaaagagatacaggtagatataaagtgatc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgtcttattgaaaatatggtataagaagtaaaaagagatacaggtagatataaagtgatc 793
Query: 597 c 597
|
Sbjct: 794 c 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 994
Length adjustment: 10
Effective length of query: 587
Effective length of database: 984
Effective search space: 577608
Effective search space used: 577608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_i03.g1 MSMg01no460_i03.g1 CHROMAT_FILE:
MSMg01no460_i03.g1 PHD_FILE: MSMg01no460_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:46 2005
(492 letters)
>mm_chr1_77324106_77324997
Length = 892
Score = 913 bits (472), Expect = 0.0
Identities = 487/492 (98%)
Strand = Plus / Minus
Query: 1 ctcatgggaatgaagcaggacttctttgcccttgggtcaactagaagatccatggaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctcatgggaatgaagcaggacttctttgcccttgggtcaactagaagatccatggaaggg 633
Query: 61 gcgatccaattgacctcgctatcatcctcaagtgagcttcaaacgccaacaggttctttg 120
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 632 gcgatccaattgaccccgctatcatcctcaagtgagcttcaaatgccaacaggttctttg 573
Query: 121 aggaaggtgctgctatctaggcctttggcaactacattgtagccccacagcttcttccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aggaaggtgctgctatctaggcctttggcaactacattgtagccccacagcttcttccct 513
Query: 181 gaagaataactgaagtaatagtaatgtagatgacttatacaaaatagaggtaggaaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaagaataactgaagtaatagtaatgtagatgacttatacaaaatagaggtaggaaaacc 453
Query: 241 ctatttttgaagtttgtacgcaaacgtcacaaatatcaaaaccaaggacaattcagaaat 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgatttttgaagtttgtacgcaaacgtcacaaatatcaaaaccaaggacaattcagaaat 393
Query: 301 gtagtcccagaaaagtctgtagcaaaaccaccttgaccttctaaaaaatagcaatttctt 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtagtcccagaaaagtctgtaggaaaaccaccttgaccttctaaaaaatagcaatttctt 333
Query: 361 ccatgttcctcaataacccagggagaaatctatgaaagagcaagtttaatattaaaaaga 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 332 ccatgttcctcaataacccagggagaaatctatgaaagagaaagtttaatattaaaaaga 273
Query: 421 ttacatcgcatatctaagtgctatccacaattctatatctgaatgtgtttgctggaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttacatcgcatatctaagtgctatccacaattctatatctgaatgtgtttgctggaaact 213
Query: 481 tgcaaagagtca 492
||||||||||||
Sbjct: 212 tgcaaagagtca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
