BAC Information

Click to search

BAC

Clone NameMSMg01-461J13
Chromosome1 (Build37)
Map Location 96,811,479 - 96,811,932
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461J13.T7 (MSMg01no461_j13.b1)MSMg01-461J13.TJ (MSMg01no461_j13.g1)
ACCAG546682AG546683
length7691,042
length of high quality
(start - end)
454 (73 - 526)---
definitionCHROMAT_FILE: MSMg01no461_j13.b1 PHD_FILE: MSMg01no461_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:15 2005CHROMAT_FILE: MSMg01no461_j13.g1 PHD_FILE: MSMg01no461_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAACCAGGGCGGAA
TTCTTCCTGTTCCCACAGATTCATTTGAGTAGGATCAGTTGCCTTCTGCA
ACAAGTAATTCCAGCAAGATACCAGCATCACAACACAGAATTTTAAACAA
CTGAGATAAATTAGTCAATATCTTAACGAATGGAAATCCATGTCATGTTT
AAGCATTGGTGGAAAATACTTTGAGCTTTTCCTTTTCCCAATGATGATTT
AAAAGTATGAAAAAATGACCATGGTGCAAAGAATTTTAGTTACGGTTGAC
AATCAATAGATAATCNTTTATAGAATATAAAACTGAAGACTGAGGAGAAC
AAGGAAAATCAAAGAAGAGTGAAGGGCAGAAGGTGCTGGCGTATATGACT
AAATGAAATGCAGTAAGGGCAAGCGATTGACAGGGGCAGCACTGGAGGAA
AGGCACACACATTGAATCCTGTAAAAGAGAAAGAAGTCCAATAATATATA
CACACAGAGACACACTGATACACACATAGTCACACAGATGCATACACATA
CACAGACTCTCACTCAGAGATACTCACACTTGCTTTATCACCGTACAACA
CACACACCCCTTTAAAAATGGTTCTTTGTGACTTACCAAGGGCCCCCTTT
TTTATCCTGTTAAAGAAAAAAAAACCCCATACAATTCTCTAACCCCCCCC
CAAGTAGCCTTGAATCGACCTTAATATCCCCGTTGTTCTCCCTTTCTCTT
AACTTACTCCGATGATTTG
CAGTTATGGTCACGCACTTGTACAGTTAATACAGCTTTCTCAGAACGGGA
AAGTTAAAACAATGGGCCCGGGTTGTCCCGGTAATTAATTCGGCGATGGC
TGTATTTAAAAACATCTAACGCGAAACGCGAATTAATTCGTCTTCATACC
ACTACCATTACATAATGGTACCGGATCTGCGGCAGGATCGGTAAATACGA
GACTTATCCCCGAGCAAAACAAATACCAAACGAATAGCGGCCTAGTTATA
TAACCATAAACGCCATAAATGCCTACAGTAACCGTCTCCACTTAGAATCC
ATACCTACGCGATGTGGATCAACCAAAATAATGACCCGGTACGTAGACCC
TAAGGGACTCTAGTCTTGACATGACTATTTGATTCGAATTTTCCTTCCCG
TAGCTATAGTACGAAATACAAGTGAACACGTATCTACGACCCCCCCTTGT
CATAATCTGTGTTATGCCCGGTAGAGCGGACCTTACCGATTTACGCAACC
AAAAGGATGAGAGTCGTGTTACCCGGACAAAGCATTGCTATAAACGCCTA
GACCCACCTGCATACTTATTGGCTTGTTATATTGTTACGATATCCACAGA
GGGAGGGTTCGCATATCCAAATTCCCCCGCCGCGATACCTCTTATGCGGG
TCTTTCACATACTAGAACGCTGGTGTATATCAAGTTACATTGCTCCATTA
ATGCGACCCACATTACAGCCTTACAACTGGCAATGTCGCACACCAGATTA
TTACGATGATACGAAATTAAGAAACCAAGAACGACGCAATCAATATCCCA
CGCAAACAGTAATACTTGTATGAGGTAAAAACCGCGAATCAGACCGATAA
CGAGTCATACCATCATGGAGGGGAGCCGCCAATTGTACGTTTAGCTATAT
TACCCTGCCGCGTTCTATCATATTCGTTAGGCTCGCCACCGGCCGCGTAT
GTATGACCATCAGTCGAGCGTATTTCGATTACATACATTTAGAACCGTCG
TCTGTGTGAGCACTAAATCACCTCCTTCGTATATTACCGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_j13.b1 MSMg01no461_j13.b1 CHROMAT_FILE:
MSMg01no461_j13.b1 PHD_FILE: MSMg01no461_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:15 2005
         (454 letters)



>mm_chr1_96811279_96812132
          Length = 854

 Score =  849 bits (439), Expect = 0.0
 Identities = 451/455 (99%), Gaps = 2/455 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgagtaggatcagttgccttctgcaacaagtaattccagcaagataccagcatcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 atttgagtaggatcagttgccttctgcaacaagtaattccagcaagatatcagcatcaca 260

                                                                       
Query: 61  acacagaattttaaacaactgagataaattagtcaatatcttaacgaatggaaatccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacagaattttaaacaactgagataaattagtcaatatcttaacgaatggaaatccatg 320

                                                                       
Query: 121 tcatgtttaagcattggtggaaaatactttgagcttttccttttcccaatgatgatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgtttaagcattggtggaaaatactttgagcttttccttttcccaatgatgatttaa 380

                                                                       
Query: 181 aagtatgaaaaaatgaccatggtgcaaagaattttagttacggttgacaatcaatagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtatgaaaaaatgaccatggtgcaaagaattttagttacggttgacaatcaatagata 440

                                                                       
Query: 241 atcntt-tatagaatataaaactgaagactgaggagaacaaggaaaatcaaagaagagtg 299
           | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agc-ttgtatagaatataaaactgaagactgaggagaacaaggaaaatcaaagaagagtg 499

                                                                       
Query: 300 aagggcagaaggtgctggcgtatatgactaaatgaaatgcagtaagggcaagcgattgac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagggcagaaggtgctggcgtatatgactaaatgaaatgcagtaagggcaagcgattgac 559

                                                                       
Query: 360 aggggcagcactggaggaaaggcacacacattgaatcctgtaaaagagaaagaagtccaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggggcagcactggaggaaaggcacacacattgaatcctgtaaaagagaaagaagtccaa 619

                                              
Query: 420 taatatatacacacagagacacactgatacacaca 454
           |||||||||||||||||||||||||||||||||||
Sbjct: 620 taatatatacacacagagacacactgatacacaca 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)