Query= MSMg01no461_n18.b1 MSMg01no461_n18.b1 CHROMAT_FILE:
MSMg01no461_n18.b1 PHD_FILE: MSMg01no461_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:37 2005
(482 letters)
>mm_chr1_34557619_34558503
Length = 885
Score = 810 bits (419), Expect = 0.0
Identities = 469/487 (96%), Gaps = 7/487 (1%)
Strand = Plus / Plus
Query: 1 acacaaggctaaatgctttcaatcgaagacatgataacagcaagttaagtagaag---ag 57
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 201 acacaaggctaaatgctttcaatcgaagacaagataacagcaagttaagtagaagagaag 260
Query: 58 gtgaatttgacacgagatttagggtcacagtctggccagcaacagggaggcttggaagca 117
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gtgaatttgacacgagatttagggtcacagtctggccagcaacagggaggcttagaagca 320
Query: 118 gg-tgcttctctgaggtcggggttagggcccccctcccttgccctagcctctaagtgtct 176
|| | |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct: 321 ggat-cttctctgaggtcggggttagggcccccttcctttgccttagcctctaagtgtct 379
Query: 177 gcctcacaggctagtctccgggacagtggtcagaggcattagaagggatgcaccatcact 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcctcacaggctagtctccgggacagtggtcagaggcattagaagggatgcaccatcact 439
Query: 237 ctctaagggtttgtgtcagggcagatggggtctccaggtcaggccagggagtgagaatgg 296
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctctaaggggctgtgtcagggcagatggggtctccaggtcaggccagggagtgagaatgg 499
Query: 297 aagcacagaggggacggcctgggcgggggcagctctcagaaccgagaacctggcctccct 356
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 aagcacagaggggacggcctgggcgggggcagctcttagaaccgagaacctggcctccct 559
Query: 357 gagagtctggaccttcagtcgtcct-tggtcatgacctatcctgaccacagtttctgggc 415
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 560 gagagtctggaccttcagtcgtcctctg-tcatgacctatcctgaccacagtttctgggc 618
Query: 416 ccggggacaggcttgggtttgctacctacaagcaacccctgggcacccttgagggatatg 475
| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 619 ctgaggacaggcttgggtttgctacctacaggcaacccctgggcacccttgagggatatg 678
Query: 476 agccatg 482
|||||||
Sbjct: 679 agccatg 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 885
Length adjustment: 10
Effective length of query: 472
Effective length of database: 875
Effective search space: 413000
Effective search space used: 413000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_n18.g1 MSMg01no461_n18.g1 CHROMAT_FILE:
MSMg01no461_n18.g1 PHD_FILE: MSMg01no461_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:37 2005
(406 letters)
>mm_chr1_34429458_34430263
Length = 806
Score = 692 bits (358), Expect = 0.0
Identities = 406/452 (89%), Gaps = 46/452 (10%)
Strand = Plus / Plus
Query: 1 actggccccaaaaacaggccagggaagtcaccagtgggagagaggcagggaggggaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 actggccccaaaaacaggccagggaagtcaccagtgggagagaggcagggaggggaagag 214
Query: 61 aaagagagaaagggcatgcttgcagagaaagaagaggggagaaggatgtaatataatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aaagagagaaagggcatgcttgcagagaaagaagaggggagaaggatgtaatataatcca 274
Query: 121 acatgtctggattacatagggagcagcctctgggggaagggcagcctagcccctgggctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 acatgtctggattacatagggagcagcctctgggggaagggcagcctagcccctgggctg 334
Query: 181 gaaagttcaaggttggggggaaagggtaggccaggaagcctggtcaaatatatatgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gaaagttcaaggttggggggaaagggtaggccaggaagcctggtcaaatatatatgtgtg 394
Query: 241 tgtgtgt----------------------------------------------atatata 254
||||||| |||||||
Sbjct: 395 tgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatata 454
Query: 255 taatttattctataaattagctctgtccctgaattttggagaattgaatgataagcaatt 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taatttattctataaattagctctgtccctgaattttggagaattgaatgataagcaatt 514
Query: 315 tttgttgaccatttataacttggaagaactgttctttctgaagcagtttgaggtctaatt 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttgttgaccatttataacttggaagaactgttctttctgaagcagtttgaggtctaatt 574
Query: 375 tggttaagtctaaagtgagttttgaagaaagt 406
||||||||||||||||||||||||||||||||
Sbjct: 575 tggttaagtctaaagtgagttttgaagaaagt 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
