Query= MSMg01no461_o01.b1 MSMg01no461_o01.b1 CHROMAT_FILE:
MSMg01no461_o01.b1 PHD_FILE: MSMg01no461_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:39 2005
(243 letters)
>mm_chr1_71474138_71474784
Length = 647
Score = 402 bits (208), Expect = e-117
Identities = 235/246 (95%), Gaps = 6/246 (2%)
Strand = Plus / Plus
Query: 1 tggaaatatcttggaa--ta---tcattatttggcacaaatatgtccatatgccctcagc 55
|||||||||||||||| || ||||||||||||||||||||||||| ||| |||||||
Sbjct: 201 tggaaatatcttggaatttagcctcattatttggcacaaatatgtcca-atggcctcagc 259
Query: 56 catttagagatgagttaaataccaaagtgaatggcatttcagaaaccctgaacccataca 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catttagagatgagttaaataccaaagtgaatggcatttcagaaaccctgaacccataca 319
Query: 116 tgattagtgattacgtcatcatgcatgatagcatcatctctaaccagaattgcactgtgt 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgattagtgattacgtcatcatgcatgatagcatcatctctaaccagaattgcactgtgg 379
Query: 176 ttgacatgaataaagcaagttctatgaatttttattattgactgtattgttcttattaaa 235
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 gtgacatgaataaggcaagttctatgaatttttatttttgactgtattgttcttattaaa 439
Query: 236 tattga 241
||||||
Sbjct: 440 tattga 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 647
Length adjustment: 9
Effective length of query: 234
Effective length of database: 638
Effective search space: 149292
Effective search space used: 149292
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no461_o01.g1 MSMg01no461_o01.g1 CHROMAT_FILE:
MSMg01no461_o01.g1 PHD_FILE: MSMg01no461_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:39 2005
(362 letters)
>mm_chr1_71562280_71563041
Length = 762
Score = 669 bits (346), Expect = 0.0
Identities = 358/362 (98%)
Strand = Plus / Minus
Query: 1 tcctcctttatcatctgtatgttggagataaagtggaaagtgtgtttctctttgggagtc 60
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcctcctctatcatctgtgtgttggagataaagtggaaagtgtgtttctctttgggagtc 503
Query: 61 tggcgtttgaatgagagtggtgcttttcttagcttaaggaagataaaaggcgttatcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tggcgtttgaatgagagtggtgcttttcttagcttaaggaagataaaaggcgttatcacg 443
Query: 121 taatgccttctttcacctaggatgtcggtcccatgccaacaattggaattgattgaactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taatgccttctttcacctaggatgtcggtcccatgccaacaattggaattgattgaactc 383
Query: 181 tgttgctttttgatttaagagcctaacactggggatctactcactctgaggtttacaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgttgctttttgatttaagagcctaacactggggatctactcactctgaggtttacaaat 323
Query: 241 cattatccaaactcaaaacaaaaagaactattacagggcaccttaatgtttatctgctgg 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caatatccaaactcaaaacaaaaagaactattacagggcaccttaatgtttatctgctgg 263
Query: 301 agagataaacacttgtaaacatgcatttttttgactgagtttcaataataacattgtgag 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agagataaacacttgtaaacaggcatttttttgactgagtttcaataataacattgtgag 203
Query: 361 at 362
||
Sbjct: 202 at 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
