ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATGTTTCCCCATCCGCTTATGCCTATCTAAAATTCAAGACAAGTGGT
CTTATAATTTCCACTACAAGTATAATTTACTTGGAAACATGACATCTATT
TGCTATTATTAAATATCACTGAGGGTATACTGTGAAATTGTATTTCTATT
AGCACACATTAGCACATTTTAACAGAAAGCATCTCTCTATTAAAATGAAA
TATTGCTGAGATAAAGAGATGGCTCTGTGCCTAAAGAGTACTTGTTCCTC
TTGCAGAGGACCTGGGTTCATTTCCTAGCACCATGAGGCAGGCCAGCAAT
TGCCTAGAATATAAAGTCCAGAGAACCTGATGTCATCTTCTGCCTTCCAA
GTGATGCACATTGTATACAGACACACATGCAGGCACTACATTCATCAAGA
TAAACAAATCTCTTTTTAATTATAAAAAAAACATTTACTATAAGATTATC
CCATTCAAATACCAACCACTTATTAAGCCTGATAATTCTAGAACAGACAA
CTTATCTAATCCCCTGTACATCTCTCCTGACCTACCTGGGATTTATCCTG
CTCATGTCTTTTCCCCTGGCTGACATGGTCTTCTTAGCGACATACTGATC
TGGCTACTACAGGGATTATTGTCTATATCATCTTTGAAACGTCTATGAAG
TTTTTTTGCTCCAGCATCCACTTATAATATGTTTCCCC

ATGACTTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAATAATTCATAAGAATGTA
GTTACTGAGCTGTGGATCAGCCATTGTTCTAAGTGGTCTCAAAGATCCAT
CAACAAACAAAGTTCCTAACACAACAAAAAAGACAAGAAACAAACAGCTG
GCTGCACAGTGCCCCCTATGACAAGGAGTGCGTGGGAGGCGGTATTCCAG
GTAAGGCTGTGATTTTCTGCCTAGTGGTTGGGTGGGCTAATAAGACAGTG
TCAGTACGGACTGAATATTCCGCAAGCCAGTGAAGACTTCCCAGAAAATG
TCCCTTTTGTGTTTGTTTATTTTTGAAACAGGCTCTCTTGAGGTTGGTAC
TGTGTCTCTGTGCCTCCTAACTAATGTAATTACCCTTGAACATCTGCCCT
CCAAAACAACCTTTGTCCAGTTAGCGCTGCCCCACTACCTTTACTCCCCT
CTTTTTGTTTGCGCTCAAACTATACTGTATCTCCCCACTTTTATTCTCCC
ACCTAACTTATTCCTTTCCGCCCCCTTCTCATATTTTTCCATTTCCCATC
TATACAACAACCCAGGCTTTTATATCAACTTATATCCAATTTTCTTCCTT
CATACATCTCTTTTTCCTACCTCCCCCCCTTTTTTTTCTTCTTCTTGTTT
TTCCGCTCTTTCCTATCATCAATCTTTTCCCCTCCACTCTTTTACCTCCC
TTTTTTTCTTACTTACCGCTTCCTTTTTATCCTTCTCACG

Query= MSMg01no461_o22.b1 MSMg01no461_o22.b1 CHROMAT_FILE:
MSMg01no461_o22.b1 PHD_FILE: MSMg01no461_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:43 2005
         (354 letters)



>mm_chr1_84726384_84727137
          Length = 754

 Score =  646 bits (334), Expect = 0.0
 Identities = 349/354 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgcttatgcctatctaaaattcaagacaagtggtcttataatttccactacaagtata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tccgcttatgcctatctaaaattcaagacaagtggtcttataatttccactagaagtata 260

                                                                       
Query: 61  atttacttggaaacatgacatctatttgctattattaaatatcactgagggtatactgtg 120
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 261 atttacttggaaacatgacatctatttgctattattaactatcacggagggtatactgtg 320

                                                                       
Query: 121 aaattgtatttctattagcacacattagcacattttaacagaaagcatctctctattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattgtatttctattagcacacattagcacattttaacagaaagcatctctctattaaa 380

                                                                       
Query: 181 atgaaatattgctgagataaagagatggctctgtgcctaaagagtacttgttcctcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaaatattgctgagataaagagatggctctgtgcctaaagagtacttgttcctcttgc 440

                                                                       
Query: 241 agaggacctgggttcatttcctagcaccatgaggcaggccagcaattgcctagaatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaggacctgggttcatttcctagcaccatgaggcaggccagcaattgcctagaatataa 500

                                                                 
Query: 301 agtccagagaacctgatgtcatcttctgccttccaagtgatgcacattgtatac 354
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 agtccagagaatctgatgtcatcttctggcttccaagtgatgcacattgtatac 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no461_o22.g1 MSMg01no461_o22.g1 CHROMAT_FILE:
MSMg01no461_o22.g1 PHD_FILE: MSMg01no461_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:44 2005
         (152 letters)



>mm_chr1_84880472_84881023
          Length = 552

 Score =  263 bits (136), Expect = 3e-75
 Identities = 148/152 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaaataattcataagaatgtagttactgagctgtggatcagccattgttctaagtgg 60
           |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct: 352 tcttaaataattcataagaatgcagttactgagctgtggaccagtcattgttctaagtgg 293

                                                                       
Query: 61  tctcaaagatccatcaacaaacaaagttcctaacacaacaaaaaagacaagaaacaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tctcaaagatccatcaacaaacaaagttcctaacacaacaaaaaagacaagaaacaaaca 233

                                           
Query: 121 gctggctgcacagtgccccctatgacaaggag 152
           ||||||||||||||||||||| ||||||||||
Sbjct: 232 gctggctgcacagtgccccctgtgacaaggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 552
Length adjustment: 8
Effective length of query: 144
Effective length of database: 544
Effective search space:    78336
Effective search space used:    78336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)