BAC Information

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BAC

Clone NameMSMg01-461P03
Chromosome1 (Build37)
Map Location 156,170,077 - 156,346,079
singlet/doubletdoublet
Overlap geneCacna1e
Upstream geneLamc1, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461P03.T7 (MSMg01no461_p03.b1)MSMg01-461P03.TJ (MSMg01no461_p03.g1)
ACCAG546948AG546949
length824756
length of high quality
(start - end)
133 (79 - 211)395 (77 - 471)
definitionCHROMAT_FILE: MSMg01no461_p03.b1 PHD_FILE: MSMg01no461_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:45 2005CHROMAT_FILE: MSMg01no461_p03.g1 PHD_FILE: MSMg01no461_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,345,947 - 156,346,079)(156,170,077 - 156,170,471)
sequence
CCCTCTATAATCGCGGTCGCTAAAAGAGTCACTATTTCTAGAGGATCCGC
GGAATTCCAAGACTTCCCACAACACATGGGCACTCCATTACACCACGGAT
GTAGAAATAGAGGATGGAACTGATTATATACATTCGCATCTTAAACCCAG
ACATATGTCAGGCCATCTTTCTACTATATGCCAGAACTCTCCCTTTAAAG
TTCAGATGTTTCATCCATAGAATCTGGACTTCGTGAGACATTAAAAGGGC
CACTCTTTGATGTTACCACATTCCTCACGAAATTTAGTCGATAGGATCCG
GTCTCTACACAAGGCCAATTTCTTTGTGTTTTGACTCCGTATCACGCTTA
TTTGCGTATTCTTCTTTACTCCTTATACCAGAGCATACCACACCCATATT
CCCTATTTTAACTTTATTTAGACCCGTTTATCGCTGTTTTTTTCTCATCG
CCTATTCTTTTTCCTTTGTTTCATTCTCTCGATGTTACTTGTTTCTATCC
TACTGTTCCCATTGTTTTCCTTCATTTTTTGCGCCATTAGTCGGTTGATT
TTATTCACGCTTTCCCTCTTTTTCCTCCCTTACTTCTTCTATCCACTTTT
TTATGTCCTCCCTTTTTTCCCGCCACACCTGTATATGTTCTCTTCTTCAA
TTTGTTATTCGTTACCTTTTCCTCCATTCCCTCCACCTCATTATGTTTTC
CCTCTTCTCTCATGACATTCTCATTTATCTCTTTTTTTCCTTCACTTCTT
CTCATTGTTTTACTTTTATATCGCTTCTCTTTTATTTTCCCTCTCTTCTC
CTCTTCCCTTTACTCTCTCGTTTC
CTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTGGCTGGTAAATGCTCGGGCA
GTCCGTTTCTCCTTAGTTTGCTTCTTCCAGATCAGGGCACAAAGGAGGCA
GCTGCGGAGAGTCCCTGGAACTGACCTACCAGTTAAAAAGCACACAGCAG
AAATAGGATGGTACAGATGCCGACCACACCACTAAGGACTATGAATGGCC
TTTGATGCTTCAAAAGCTTGGTCCACTGAATCAGGCTATTGTCAGGAGAA
ATCTCATAACCCAGGGTGGTCATGGTCTTTCAAAAGTAGCTCAGTTGTCC
TGTTGTTTACTGCAGAGCCACTTTTATATGATTCCAGATGATTCAGACTG
AACCCATGAGAGTCTTTCTTTCTGCTACTGCCATAGCTTTGGCTTTGTAG
AATCCCCATGTATAACCTTGCATCACATGATTGTGCGCTGCAAGGCATGC
CTTGGTTCTGCACTGGGGTACCCGCACCGCCGGTGTTGTCTGCCATTCTA
TTATTATCCCCCTGTACGCATTGCCCATTTTCCCGACCCCTTTATGCCTT
TGTCTCCCTCCATCTGTATCCTTATATTTCCCCTTTTTTTTTTTTTTTCC
TCCCTTTTTGTTTTCTTCCTCCCCCCCCCCTTTTTTCTTTTCCCACTTTT
CTTTGCTCCCTTCCTCCCCTTTTTCGTCTTCCCATCCTCCTCTCTTTTTC
CCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_p03.b1 MSMg01no461_p03.b1 CHROMAT_FILE:
MSMg01no461_p03.b1 PHD_FILE: MSMg01no461_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:45 2005
         (133 letters)



>mm_chr1_156345747_156346279
          Length = 533

 Score =  257 bits (133), Expect = 2e-73
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcactccattacaccacggatgtagaaatagaggatggaactgattatatacattcgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggcactccattacaccacggatgtagaaatagaggatggaactgattatatacattcgca 274

                                                                       
Query: 61  tcttaaacccagacatatgtcaggccatctttctactatatgccagaactctccctttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcttaaacccagacatatgtcaggccatctttctactatatgccagaactctccctttaa 214

                        
Query: 121 agttcagatgttt 133
           |||||||||||||
Sbjct: 213 agttcagatgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 533
Length adjustment: 8
Effective length of query: 125
Effective length of database: 525
Effective search space:    65625
Effective search space used:    65625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no461_p03.g1 MSMg01no461_p03.g1 CHROMAT_FILE:
MSMg01no461_p03.g1 PHD_FILE: MSMg01no461_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:45 2005
         (395 letters)



>mm_chr1_156169877_156170671
          Length = 795

 Score =  756 bits (391), Expect = 0.0
 Identities = 394/395 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctggctggtaaatgctcgggcagtccgtttctccttagtttgcttcttccagatcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctggctggtaaatgctcgggcagtccgtttctccttagtttgcttcttccagatcagg 260

                                                                       
Query: 61  gcacaaaggaggcagctgcggagagtccctggaactgacctaccagttaaaaagcacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacaaaggaggcagctgcggagagtccctggaactgacctaccagttaaaaagcacaca 320

                                                                       
Query: 121 gcagaaataggatggtacagatgccgaccacaccactaaggactatgaatggcctttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagaaataggatggtacagatgccgaccacaccactaaggactatgaatggcctttgat 380

                                                                       
Query: 181 gcttcaaaagcttggtccactgaatcaggctattgtcaggagaaatctcataacccaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttcaaaagcttggtccactgaatcaggctattgtcaggagaaatctcataacccaggg 440

                                                                       
Query: 241 tggtcatggtctttcaaaagtagctcagttgtcctgttgtttactgcagagccactttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtcatggtctttcaaaagtagctcagttgtcctgttgtttactgcagagccactttta 500

                                                                       
Query: 301 tatgattccagatgattcagactgaacccatgagagtctttctttctgctactgccatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgattccagatgattcagactgaacccatgagagtctttctttctgctactgccatag 560

                                              
Query: 361 ctttggctttgtagaatccccatgtataaccttgc 395
           |||||||||||||||||||| ||||||||||||||
Sbjct: 561 ctttggctttgtagaatccctatgtataaccttgc 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)