Query= MSMg01no461_p14.b1 MSMg01no461_p14.b1 CHROMAT_FILE:
MSMg01no461_p14.b1 PHD_FILE: MSMg01no461_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:47 2005
(441 letters)
>mm_chr1_135166360_135167200
Length = 841
Score = 694 bits (359), Expect = 0.0
Identities = 400/419 (95%), Gaps = 11/419 (2%)
Strand = Plus / Minus
Query: 28 ccccccccctcagctcagaaagaggaggaggaactgagcaggggacgtgagattcaggct 87
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 640 ccccccccc-cagctcagaaagaggaggaggaactgagcaggggaagtgagattcaggct 582
Query: 88 ctgcaagccactggcaggacctcccacttaggtgagggaattgtggtcctcactccctct 147
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctgcaagccactggcgggacctcccacttaggtgagggaattgtggtcctcactccctct 522
Query: 148 agacattcagatccacagaatgggcccagtgctggcataaagctgagtacttttggacat 207
||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct: 521 agacattcaaatccacagaatggacccagcgctggcataaagctgagtacttttgaacat 462
Query: 208 ctttctctctcctttccccagtgtccgcaccaggtactcacctgtgccgcacaggctgtt 267
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 461 ctttctctctcctttccccagtgtccgcaccaggtactcacctgtgacgcacaggctg-- 404
Query: 268 ttt-----ctgacttctgggctggagggatctggacccgagcagcctcgcccatggcctg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ---aggcactgacttctgggctggagggatctggacccgagcagcctcgcccatggcctg 347
Query: 323 gatccaggcctcctgctcctcggggctctcggcactgaagaagtaggtgcggactccagc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gatccaggcctcctgctcctcggggctctcggcactgaagaagtaggtgcggactccagc 287
Query: 383 gtgctctgcctgtggggagtggcagtgcgtagaactggccccagcctcatctacccagt 441
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtgctctgcctgtggggagaggcagtgcgtagaactggccccagcctcatctacccagt 228
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_p14.g1 MSMg01no461_p14.g1 CHROMAT_FILE:
MSMg01no461_p14.g1 PHD_FILE: MSMg01no461_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:47 2005
(491 letters)
>mm_chr1_135092540_135093430
Length = 891
Score = 934 bits (483), Expect = 0.0
Identities = 489/491 (99%)
Strand = Plus / Plus
Query: 1 agcttctacttgctccatgtagctcatttgaattaccttgagcatccttttagatcgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcttctacttgctccatgtagctcatttgaattaccttgagcatccttttagatcgtac 260
Query: 61 ccaagacacatgctatcttctcccatctacttcctcccgcagttgctgctgggtccccaa 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagacacatgctatcttctcccatccacttcctcccgcagttgctgctgggtccccaa 320
Query: 121 gtgtctctgcagtgggcttgttaattggcgcttcagctggctgattgactgtaatggggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtctctgcagtgggcttgttaattggcgcttcagctggctgattgactgtaatggggg 380
Query: 181 tgaacatttatttaccccagcagccgcctctcagacagctgttaattgcaggcatgagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaacatttatttaccccagcagccgcctctcagacagctgttaattgcaggcatgagag 440
Query: 241 agacaataattatgggataatgtgtggcttttgtgtgaggccttctctttgcacgtgtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacaataattatgggataatgtgtggcttttgtgtgaggccttctctttgcacgtgtca 500
Query: 301 gcaaacactggtgggtttgttttctaacatttgacgcccctgctgaggagatgctgtagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaacactggtgggtttgttttctaacatttgacgcccctgctgaggagatgctgtagc 560
Query: 361 ccctcccccaccctcatcctgcagcctcctcacgcttgcatcccttcccttccccctgtc 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 ccctcccccaccctcatcctgcagcctcctcatgcttgcatcccttcccttccccctgtc 620
Query: 421 ttgggcctggaatttaaccaggttccctgggtgatagaaagtgttttcaccaggtacctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgggcctggaatttaaccaggttccctgggtgatagaaagtgttttcaccaggtacctc 680
Query: 481 taatcccagca 491
|||||||||||
Sbjct: 681 taatcccagca 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
