BAC Information

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BAC

Clone NameMSMg01-462H11
Chromosome1 (Build37)
Map Location 37,233,805 - 37,234,010
singlet/doubletsinglet
Overlap gene4921511C04Rik
Upstream geneUgcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik
Downstream geneCnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462H11.T7 (MSMg01no462_h11.b1)MSMg01-462H11.TJ (MSMg01no462_h11.g1)
ACCAG547346AG547347
length792806
length of high quality
(start - end)
334 (78 - 411)206 (75 - 280)
definitionCHROMAT_FILE: MSMg01no462_h11.b1 PHD_FILE: MSMg01no462_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:29 2005CHROMAT_FILE: MSMg01no462_h11.g1 PHD_FILE: MSMg01no462_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAAGCATGCGCG
GAATTCATTGTATATCGGCTGTATTTCAATGTCCCTCACATCACGCGAAA
GGATTTTGCCTCCATAGTAGCTAAGCTAAGAGTTGACAGTTCTGCTGCAC
CAAGGAATGAATTATAGGTATGATTTTTAGACACAGATTTCCTGCTATGG
TCAAAGCTATTTGACTTGAGTGACTGTTGTCATTCGCAGCCTGCAGGGAA
CAGGTTACATTCATTTAAGAAATGGTGTGTGTATTGAGATGGTCTATCCA
TGAAGTCATTCATCTTTTGTTTCAATGAACAATGGCTCTGCTTGGAGGAT
GGCACAGACGTTAGGTGAGGGTAAGATTCTGGTTCATTGGCTGTGATGAT
TTTGAAAAGCATCCACCCCACAATAAGAGTAACTTATAAAGTCCTCTTTT
TCAAAATTGATACAGTAATTATAAATATCAAGCACAGTCTTCAGTCTCAC
CTTTTGCTGTTCTCTTACAAGTCACCGCTCAAATTAATTGTCTACACTTC
TTTTGGCTGTAAAAATCATTTTGATATATGTAATCCTGTTCTGAAAACCC
TTTTTTATTGCAAATAACATCAAAAATCCCATCCCTACCATTAAAGTATT
TTGATTATAGTACTATTCTTGACTTTCAGGACTCCTTTATTGTGGGTCCC
TTGGTTTTTACCCTTTTCTTGTTTTTCCTCCATTTTCCTAAATTCTCTTT
CTGTTATTCGTACTCTTCATTTGTTTATTATATTTTTCCCCC
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTAAGCTTATTTGGCCGCACCTACA
GTTTTGGGGAACACTTTGGAAAACCCAAGTTTTGGTAGGCGTTTGGCAAC
GGGCAGGGGTCCGGGGATAGTCATCAAGATGGTAAGGATTCAGGAACTCC
CAGAGATTGGTAGAATCAAAGACTGGGATGAAGGAGGACCTAGGGTGTTT
GATATAAAGAGATGGGGACCGTGTCCTCAGTGTCAGAAGGGTTGTCCCCT
GGACAAAGAAAGTATTGTTTGTTCTAGTACAGACATGGAAGCCATGGGGA
ATATCACTGTGATGGTTTGTATATACTCAGCCTAGTTTGTGCTACTATCA
GAAGTGTGGCCTTGCCCCATTTAAGCGTTCTCTGTGCCTGTCCCCTTTCA
ACTTTCTCCTTCCCTCTTCTTTGTACTTTTATTCTTTCTGGTATTCTTTC
TCTTTTCTACTGTCTCTATTTCTTTCCTTCTTTTTGATTTTTTGTTCTTC
TTTTCTCTTTCCCCTGCCTCTTTCCTTTTTTTTCCCTTGCTTCTGCTTCC
TTTTTGCCTCGTTCTGCCCTTCTATCTTTTCTCTTCTCCTGTCCCTCTTT
TTTCCCTTGCCTCTATTTCTTTTCTTTCTTTTCTATATAGTCCGTTCCGA
CCTCTTTCCCTTCTCTTCATCCCTTGTCCCTCTCTCCTCCTCCTTTTTTT
TTTCTTCTATTTTATCTTCTGCCCCTCTTCGTCCTTTCGCCTCCCTTTGC
CCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_h11.g1 MSMg01no462_h11.g1 CHROMAT_FILE:
MSMg01no462_h11.g1 PHD_FILE: MSMg01no462_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:29 2005
         (206 letters)



>mm_chr1_37233605_37234210
          Length = 606

 Score =  398 bits (206), Expect = e-116
 Identities = 206/206 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaagcttatttggccgcacctacagttttggggaacactttggaaaacccaagttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tctaagcttatttggccgcacctacagttttggggaacactttggaaaacccaagttttg 347

                                                                       
Query: 61  gtaggcgtttggcaacgggcaggggtccggggatagtcatcaagatggtaaggattcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtaggcgtttggcaacgggcaggggtccggggatagtcatcaagatggtaaggattcagg 287

                                                                       
Query: 121 aactcccagagattggtagaatcaaagactgggatgaaggaggacctagggtgtttgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aactcccagagattggtagaatcaaagactgggatgaaggaggacctagggtgtttgata 227

                                     
Query: 181 taaagagatggggaccgtgtcctcag 206
           ||||||||||||||||||||||||||
Sbjct: 226 taaagagatggggaccgtgtcctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)