Query= MSMg01no462_h16.b1 MSMg01no462_h16.b1 CHROMAT_FILE:
MSMg01no462_h16.b1 PHD_FILE: MSMg01no462_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:30 2005
(568 letters)
>mm_chr1_26154712_26155675
Length = 964
Score = 1036 bits (536), Expect = 0.0
Identities = 559/568 (98%), Gaps = 4/568 (0%)
Strand = Plus / Plus
Query: 1 ttctcacattaagtatttaaagcatatgggtcttgtgttaataaacaacagaatttctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcacattaagtatttaaagcatatgggtcttgtgttaataaacaacagaatttctgc 260
Query: 61 aagaactcagaatttctgcactgattgactaaattttaaatctgccaagagttggaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaactcagaatttctgcactgattgactaaattttaaatctgccaagagttggaaaaa 320
Query: 121 attgtgtgaaatttcaaggagaaagatcttaacagatgaattacatatcttttctttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtgtgaaatttcaaggagaaagatcttaacagatgaattacatatcttttctttcct 380
Query: 181 tttatggttatgctagatattgaaacaggcttcatgcatgctaagcccatattttagcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatggttatgctagatattgaaacaggcttcatgcatgctaagcccatattttagcag 440
Query: 241 ccttctctaaggtctcaatacaagtgccaatataccataaaaagacaaataataatagct 300
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttctctaaggtctcaa--caagtgccaatataccataaaaagacaaataataatagct 498
Query: 301 ttcctttctcaactcttttaataaaacatcaattaaatatttacccatacccttttaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 499 ttcctttctcaactcttttaataaaacatcaattaaatatttacccacaccctttttaaa 558
Query: 361 aagctaaatactaagatttatagagtattaaatattcctgaaacagaaaaaaaatgtctt 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 559 aagctaaatactaagatttatagagttttaaatattcctgaaacagaaaaaaa--gtctt 616
Query: 421 tcaattccttaatacaaactttgctaaaaatcatgtaactagtgtgcattttttaaaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcaattccttaatacaaactttgctaaaaatcatgtaactagtgtgcattttttaaaaag 676
Query: 481 ttaaaggtgaaggtattgttatggtttttactattatagtacaaataaggcatatatggt 540
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttaaaggtgaaggtattgttaaagtttttactattatagtacaaataaggcatatatggt 736
Query: 541 aaatttctatcttaaatatttaaatgca 568
||||||||||||||||||||||||||||
Sbjct: 737 aaatttctatcttaaatatttaaatgca 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 964
Length adjustment: 10
Effective length of query: 558
Effective length of database: 954
Effective search space: 532332
Effective search space used: 532332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_h16.g1 MSMg01no462_h16.g1 CHROMAT_FILE:
MSMg01no462_h16.g1 PHD_FILE: MSMg01no462_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:30 2005
(369 letters)
>mm_chr1_26197222_26197990
Length = 769
Score = 661 bits (342), Expect = 0.0
Identities = 360/366 (98%)
Strand = Plus / Minus
Query: 1 attacatatataaaattttaattgtgacatatataaagacgtaagtgatcaatgattaaa 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 attacatatataattttttaattgtgacatatataaagacgtaagtgatcaatgattaaa 455
Query: 61 aataagaataaacactcttttgtaggaaaaatgcattacttgtgaaaattaaggaaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aataagaataaacactcttttgtaggaaaaatgcattacttgtgaaaattaaggaaaaag 395
Query: 121 aatacaatgtttgtaataatcactttggatttatttgtctttataagcaaaggaatctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aatacaatgtttgtaataatcactttggatttatttgtctttataagcaaaggaatctca 335
Query: 181 gctcccaattttcttgatactctgtctccctaggacatttcatctgccttatgtacacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gctcccaattttcttgatactctgtctccctaggacatttcatctgccttatgtacacta 275
Query: 241 aagcagttcaggtttcattttaaaatattcattgaactgttaaaatttaagctctcacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aagcagttcaggtttcattttaaaatattcattgaactgttaaaatttaagctctcacat 215
Query: 301 cccatcaccttctgtatatatatatatatatatatatatatatatatatatatatatata 360
| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 214 ctcatcatcttctgtatatatatatatgtatgtatatatatatatatatatatatatata 155
Query: 361 tatata 366
||||||
Sbjct: 154 tatata 149
Score = 85.8 bits (44), Expect = 4e-21
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 315 tatatatatatatatatatatatatatatatatatatatatatatatatata 366
|||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 149 tatatatatatatatatatatatatatatatatacatacatatatatatata 200
Score = 85.8 bits (44), Expect = 4e-21
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 317 tatatatatatatatatatatatatatatatatatatatatatatatatata 368
|||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 149 tatatatatatatatatatatatatatatatatacatacatatatatatata 200
Score = 80.0 bits (41), Expect = 2e-19
Identities = 50/53 (94%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 317 tatat-atatatatatatatatatatatatatatatatatatatatatatata 368
||||| ||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 144 tatattatatatatatatatatatatatatatatatatacatacatatatata 196
Score = 74.2 bits (38), Expect = 1e-17
Identities = 50/54 (92%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 316 atata-tatatatatatatatatatatatatatatatatatatatatatatata 368
||||| |||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 130 atatattatacatttatat-tatatatatatatatatatatatatatatatata 182
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 9
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
