TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCGCGG
AATTCAAGGGCAGTTTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGGCT
ACATGGAGAAATCCTGTCTCAAAAACAAAAAACAAAAACAAAAACAAACA
AACAAAAAGCCAAAACAAAACCCAGTAATGATTTTAGTTTGTGGCAAAAA
TTCAATATAGATAAACCAAAGTTGTGAATGGGAACCTATAAAACTGTATC
TACATATGTATATTCTTTATATACATACATACATACATATATATACATAC
ACATATATGTACATTATATATGCACATCCATTGTGTATATTCACTGTATA
TATAATATAAAATGTGTTTAAATATAATATGTATCTGTTTCATAGGCACA
ATACTTCATAGCACTTTGTTTTGTAGCACAAATGTTGCATTTAAAACCAT
GGGTATCCAAGAGGTACACTACTGAAGACAGTAGTTTTCCACTCTTCCAA
AGTGTAAAAATGTTGATTTTCAGATATTTTCTCTCCTCTCAGGCTGGTTT
GAAACTCACCTTTTTTTTTTTTTTCCTAAATTTTCAGCGAATGAACAGTA
TTGCTTTCTGGACATTTTTTCCAAGATAAAAGTATTAAAGCCGTTTTTCC
TGGGTAAAAAGAAGGTTTTTTTTTCCTTTCCTTTCTTTCATATTTTCCCT
CCGCCCTACCTCTACATATCCACATTCACTATCTTTCCAACCTTTCCTCT
CCTACCCTATCTTATTTTCCTTTACTTCCCACCCTTTCATCC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAAATGTTCAGCATCCTTAATCATCAGAGAAATGCAAATC
AAAACAACCCTGAGATTCCACTTCACACCAGCCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGAATTCCAAGCTTGTAAAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACTGGAGAATCCTGT
AATACCTCTGCTGGGCATATATCCAGAAGATGTTCCAACTGTTCGAAGGA
CCCATGCTACACTATGTTCATAGCATCCTTATTTTTCAAAGCCAGAAGCT
GGAAAGAACCTAGATGCCACTCAACAGAGGAATGGATACAGAAAATAATG
CAAATTTACACAATGGATTGCTACTCAGCTATTAAAAAGAATGAATTTAG
GAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
AACCCAATCACAAAAGAACTCACATGATATGTACTCAATGATTAGTGGAT
ATTAGCCCAGAAACTTATAATACCCTAGATGGTAGATATTTTTTGTGATG
TACATGTGGTTCAGGGGAAAATCAACCACGGGGGTGGGATGCTTTGTTCT
TCTTATAATTGAGAGCG

Query= MSMg01no462_i08.b1 MSMg01no462_i08.b1 CHROMAT_FILE:
MSMg01no462_i08.b1 PHD_FILE: MSMg01no462_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:34 2005
         (495 letters)



>mm_chr1_103306366_103307260
          Length = 895

 Score =  758 bits (392), Expect = 0.0
 Identities = 415/426 (97%), Gaps = 6/426 (1%)
 Strand = Plus / Minus

                                                                       
Query: 66  tcctgtctcaaaaacaaaaaacaaaaacaaaaacaaacaaacaaaaagccaaaacaaaac 125
           ||||||||||||||||      ||||||||||||||||||||||||| ||||||||||||
Sbjct: 895 tcctgtctcaaaaaca------aaaaacaaaaacaaacaaacaaaaaaccaaaacaaaac 842

                                                                       
Query: 126 ccagtaatgattttagtttgtggcaaaaattcaatatagataaaccaaagttgtgaatgg 185
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ccagtaatgatttcagtttgtggcaaaaattcaatatagataaaccaaagttgtgaatgg 782

                                                                       
Query: 186 gaacctataaaactgtatctacatatgtatattctttatatacatacatacatacatata 245
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 781 gaagctataaaactgtatctacatatgtatattctttatatacatacatacatacatatg 722

                                                                       
Query: 246 tatacatacacatatatgtacattatatatgcacatccattgtgtatattcactgtatat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tatacatacacatatatgtacattatatatgcacatccattgtgtatattcactgtatat 662

                                                                       
Query: 306 ataatataaaatgtgtttaaatataatatgtatctgtttcataggcacaatacttcatag 365
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ataatataaaatgtctttaaatataatatgtatctgtttcataggcacaatacttcatag 602

                                                                       
Query: 366 cactttgttttgtagcacaaatgttgcatttaaaaccatgggtatccaagaggtacacta 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cactttgttttgtagcacaaatgttgcatttaaaaccatgggtatccaagaggtacacta 542

                                                                       
Query: 426 ctgaagacagtagttttccactcttccaaagtgtaaaaatgttgattttcagatattttc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctgaagacagtagttttccactcttccaaagtgtaaaaatgttgattttcagatattttc 482

                 
Query: 486 tctcct 491
           ||||||
Sbjct: 481 tctcct 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)