GGGGGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAA
TCCGCGGAATTCTTAATTGATTCCAATCGAATGACTGAGAGGCACCTAAA
GAAATGTTCAAGATCCTTAGTCAAAAGGGAAATTCAAATCAAAACAACCC
TGAGATTCTACTTCACACCAGTCAAAATGTCTAAGATCAAAAACTCAGGT
GATCACAGATTCTGGTAAGGATGTGGAGAAAGGAACACTTCTCAATTGTT
GGCAGGTTTGCAAGCTGATACAACTACTCTGGTAATCAGTCTTGTGGATC
CTCAGAAATGTAGATAAAGTACTACCTGATTATCTAGCTATATAACTCCT
TTTCATGTATGCAAAACATTCTCCAACAGATAACAAGGACATGTACTCCA
CTATGTTCATAGCAGCCTTATATAAAATAGCCAGATTGCTGGAAAGAACC
CATATGTCCTTCAACAGAGGAATGGATACATTTACATAATGGAGTACTAC
TGAGCTATTAAAAAGAGTGACTTCATGAAATTCTTAGACAAATGGATGGA
ACAAGAAAATATCCTGAGTGAGGTAACCCAGGCACAAAAGAACACACTTG
GTATATACTCACTGATAAATGAATATTAATCCCAAACCTTGGAATACCCC
GAAACTATTTTCGGATCATATGAAGCTCCCGAAAAAGGAGAACCAAAGGG
GGGAGGTTTTATTTCTACTTTAAAAGGGGGAAAAAAAAACTCTTGGGAAG
AAATATG

CCTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGCTTACTAAGCTCAT
CTGTTCAAGTGTACTTTTCATATTTGGCATATTCTTCTAATGACAAGCTG
TTGGTTTTCTAACTAGTCTCTACTCAGATAAGTGAGAAGAGCAATTTCAA
ACTCAGTGTATCTTGTTCATTGAACAGATGGATAAATGCATAGGATTTAG
GATAGCATGTTGATTTAACCATGAAGAGGTAATACTAAAGTAGTATCTAT
GTGTCTCAATGTGACACCATCGTAAAACTAAATTCTCATTTTTTATTCCG
AATCCCTACTAAATAAGATAAATTAAGATAATTACACATCTATGACAAAG
TATTGTTAATTGTATCTATGAATTGAAAAGTTAGAAAATAAATGAACATT
GAAAATTAAAATACCAAATATTTACAAATTAGGAGAAAACATCATGATTT
TAAATTTTAGTAGTTTTTAATTGCAGAANAAAATATATAGAGAGATAGAC
ATTTATATATATATTATACATTTTAATTAATAACAATTTTTAGACATATT
ACAATGTATGGCAAAACAAGTAATCCAAGGAATGGGTAATCACTAAGGAA
TCTTAAAATTTATGTTTATTTAAATGTCATTGTGCTATAAAGAATTTTGA
AGAAATTTTTTGATTTCACGCGGTATTATGGGCCATTTTCCGATGGTTTT
TTAAAAACN

Query= MSMg01no462_l23.g1 MSMg01no462_l23.g1 CHROMAT_FILE:
MSMg01no462_l23.g1 PHD_FILE: MSMg01no462_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:51 2005
         (498 letters)



>mm_chr1_49891983_49892880
          Length = 898

 Score =  919 bits (475), Expect = 0.0
 Identities = 493/500 (98%), Gaps = 2/500 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgcttactaagctcatctgttcaagtgtacttttcatatttggcatattcttctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tattgcttactaagctcatctgttcaagtgtacttttcatatttggcatattcttctaat 605

                                                                       
Query: 61  gacaagctgttggttttctaactagtctctactcagataagtgagaagagcaatttcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gacaagctgttggttttctaactagtctctactcagataagtgagaagagcaatttcaaa 545

                                                                       
Query: 121 ctcagtgtatcttgttcattgaacagatggataaatgcataggatttaggatagcatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctcagtgtatcttgttcattgaacagatggataaatgcataggatttaggatagcatgtt 485

                                                                       
Query: 181 gatttaaccatgaagaggtaatactaaagtagtatctatgtgtctcaatgtgacaccatc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 484 gatttaaccatgaagaggtaatactaaagtagtatctatgtgtctcaatgtgacactatc 425

                                                                       
Query: 241 gtaaaactaaattctcattttttattccgaatccctactaaataagataaattaagataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtaaaactaaattctcattttttattccgaatccctactaaataagataaattaagataa 365

                                                                       
Query: 301 ttacacatctatgacaaagtattgttaattgtatctatgaattgaaaagttagaaaataa 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttacacatctattacaaagtattgttaattgtatctatgaattgaaaagttagaaaataa 305

                                                                       
Query: 361 atgaacattgaaaattaaaataccaaatatttacaaattaggagaaaacatcatgatttt 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgaacattaaaaattaaaataccaaatatttacaaattaggagaaaacatcatgatttt 245

                                                                       
Query: 421 aaattttagtagtttttaattgcagaanaaaatatatagagaga--tagacatttatata 478
           ||||||||||||||||||||||||||| |||| |||||||||||  ||||||||||||||
Sbjct: 244 aaattttagtagtttttaattgcagaaaaaaaaatatagagagagatagacatttatata 185

                               
Query: 479 tatattatacattttaatta 498
           ||||||||||||||||||||
Sbjct: 184 tatattatacattttaatta 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)