BAC Information

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BAC

Clone NameMSMg01-463L17
Chromosome1 (Build37)
Map Location 69,910,412 - 70,144,830
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463L17.T7 (MSMg01no463_l17.b1)MSMg01-463L17.TJ (MSMg01no463_l17.g1)
ACCAG548314AG548315
length765761
length of high quality
(start - end)
471 (79 - 549)456 (80 - 535)
definitionCHROMAT_FILE: MSMg01no463_l17.b1 PHD_FILE: MSMg01no463_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:16 2005CHROMAT_FILE: MSMg01no463_l17.g1 PHD_FILE: MSMg01no463_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,144,363 - 70,144,830)(69,910,412 - 69,910,868)
sequence
CCTTCCTATCAAAATTTGCGGCGCTATACGACTCCTATATTCAGAACACC
GCGGAATTCTTTAAATTTTCACATAATTCATCTCTGTCATTATGCTGAGA
TAATATCAGTTTTACTGTGGACTAAAAGCCTGAGACATAAGGTTCATGTT
AATTTCCAAGACCATGCAACTAAAAAATCCAGAATAAATATTTGAATCTA
GGCAATCTGGCTCAATCAGTGCCTTCTTAGTCATTTATAGTAAAGTGTTG
TGGTCAAAGCATTGGTGGATTTAAGAAGAAAATACAGTTCCAAATCCTAA
CTGAGGAAGCAAGAAGGAGATGTTTTTTTTTCATTATTGTAACTGAGGAT
TAACCAATAAACAGTTTGAACTTTTCCTTCTAAGGTTACAGGACTACAAG
TTACATCAAAGCTTCCCTACCTGGATACCTTCTTATGCGTATGAAATTTA
TTTCTCTCGTGTCTTAAGAGGATGAAACAATCTCTTGAACAGCATAGGAT
ACTGCCTTTGNTCTTCTTCTTCTTCTTTTTTAATTATAGCATTTTTTAAT
ATTTTTTTATTACATATTTTCCTCAATTACATTTCCCATGCTCTCCCAAA
AGTCCCCCATACCCTCCCCCCCACTTTCCTTAACACCCAATTCCCATTTT
TTTTGGCCCGGTGGTTCCCCTGTACTTGGGGCTTATAAAAAGTTGTGGGG
CCCTATGGGCCTCTTTTTCCCTGGAAGTGCAAACAATACCCACCTTTTTA
ATAAAAATTCGGATT
NNNNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTGCTCCCCAAACCCCAA
AAGAGAATTGGTAGTCTTTTCTACTTTAGCCTTTACTCGATTTGATAGTG
ATGTCTTGTGGTTTTGATATGCGATTTGCCAAGAGCAGGTGATAATAAAC
GCAATATTTTGTGCTTCTTGTCCCCTTTGCATTTTTGGTATCAGTACTGC
CCTTTCATTTAAAGCCATTTGCCTAATTTTGATTAGGTTTTTAATTTTGT
TACTGGATTTTATGATTTTTTTCTCTTTTATATACTAGACACTTTGTATA
TTGTATTTCCCTTCAGACTGTGGTTTTACATTTTATTTCATTACTATGAT
CTTTTAAGAGATTTGATTAAAAGACTTATATGCATATCTGTGTGCTGTGG
TATTTGTATCTGGGTTCTTCCCTCAGATGTGTTGGTTATTTATAGATTCT
TTGCTTTTTCACATAAAATTTACAATCAATAGAAAATACACAAGTGAGGT
CTAGACTAATAAGGGCTTGAACATAGATCTCGCTAGTGCATTTCTGTGTG
TATGTATATACATACCTCTTATGGAGGGAGAAGTTGATGCCTTGGTAACT
CTGAGTCCTCTTTCTGCTTGGGACTCTATATAAGTATTTTCCCGCCAACT
TTCATATGGATATTTATGGACCCTCTCTGTTAATGGCACCTTTTCTCCAT
TTTGATTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_l17.b1 MSMg01no463_l17.b1 CHROMAT_FILE:
MSMg01no463_l17.b1 PHD_FILE: MSMg01no463_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:16 2005
         (471 letters)



>mm_chr1_70144006_70144876
          Length = 871

 Score =  739 bits (382), Expect = 0.0
 Identities = 446/469 (95%), Gaps = 6/469 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gtcattatgctgagataa---tatcagttttactgtggactaaaagcctgagacataagg 64
           ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gtcattatgctgagataatattatcagttttactgtggactaaaagcctgagacataagg 766

                                                                       
Query: 65  ttcatgttaatttccaagaccatgcaact-aaaaaatccagaataaatatttgaatctag 123
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 765 ttcatgttaatgtccaagaccatgcaactaaaaaaatccagaataaatatttgaatctag 706

                                                                       
Query: 124 gcaatctggctcaatcagtgccttcttagtcatttatagtaaagtgttgtggtcaaagca 183
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 705 gtaatctggctcaatcagtgccttcttagtcatttatagtaaagtgttgt-gtcaaaaca 647

                                                                       
Query: 184 ttggtggatttaagaagaaaatacagttccaaatcctaactgaggaagcaagaaggagat 243
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 646 ttgctggatttaagaagaaaatacaggtccaaatcctaactgaggaagcaagaaggagat 587

                                                                       
Query: 244 gtttttttttcattattgtaactgaggattaaccaataaacagtttgaacttttccttct 303
           ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 586 gtttagttttcattattgtaactgaggattaaccaataaaaagtttgaacttttccttct 527

                                                                       
Query: 304 aaggttacaggactacaagttacatcaaagcttccctacctggataccttcttatgcgta 363
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 526 aaggttacaggactacaagttacatcaaagcttccctatctggataccttcttatgcata 467

                                                                       
Query: 364 tgaaatttatttctctcgtgtcttaagaggatgaaacaatctcttgaacagcataggata 423
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 466 tgaaatttatttctctcatgtcttaagaggttgaaacaatctcttgaacagcataggcta 407

                                                            
Query: 424 ctgcctttgntcttcttcttcttctttttta-attatagcattttttaa 471
           ||||||||| ||||||||||||| ||||||  |||||||| ||||||||
Sbjct: 406 ctgcctttgctcttcttcttcttttttttttcattatagctttttttaa 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no463_l17.g1 MSMg01no463_l17.g1 CHROMAT_FILE:
MSMg01no463_l17.g1 PHD_FILE: MSMg01no463_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:16 2005
         (456 letters)



>mm_chr1_69910212_69911068
          Length = 857

 Score =  822 bits (425), Expect = 0.0
 Identities = 449/457 (98%), Gaps = 1/457 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttgctccccaaaccccaaaagagaattggtagtcttttctactttagcctttactcg 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tatttgctccccaaaccccaaaagagaattggtagttttttctactttagcctttactcg 260

                                                                       
Query: 61  atttgatagtgatgtcttgtggttttgatatgcgatttgccaagagcaggtgataataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgatagtgatgtcttgtggttttgatatgcgatttgccaagagcaggtgataataaa 320

                                                                       
Query: 121 cgcaatattttgtgcttcttgtcccctttgcatttttggtatcagtactgccctttcatt 180
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tgcaatattttgtgcttcttgtcccctttgcatttttggtatcagtattgccctttcatt 380

                                                                       
Query: 181 taaagccatttgcctaattttgattaggtttttaattttgttactggattttatgatttt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 taaagccatttgcctaattttgattaggtttttaattttgttattggattttatgatttt 440

                                                                       
Query: 241 ttt-ctcttttatatactagacactttgtatattgtatttcccttcagactgtggtttta 299
           ||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttctctttgagatactagacactttgtatattgtatttcccttcagactgtggtttta 500

                                                                       
Query: 300 cattttatttcattactatgatcttttaagagatttgattaaaagacttatatgcatatc 359
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattttacttcattactatgatcttttaagagatttgattaaaagacttatatgcatatc 560

                                                                       
Query: 360 tgtgtgctgtggtatttgtatctgggttcttccctcagatgtgttggttatttatagatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgtgctgtggtatttgtatctgggttcttccctcagatgtgttggttatttatagatt 620

                                                
Query: 420 ctttgctttttcacataaaatttacaatcaatagaaa 456
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgctttttcacataaaatttacaatcaatagaaa 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space:   377762
Effective search space used:   377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)