Query= MSMg01no463_l17.b1 MSMg01no463_l17.b1 CHROMAT_FILE:
MSMg01no463_l17.b1 PHD_FILE: MSMg01no463_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:16 2005
(471 letters)
>mm_chr1_70144006_70144876
Length = 871
Score = 739 bits (382), Expect = 0.0
Identities = 446/469 (95%), Gaps = 6/469 (1%)
Strand = Plus / Minus
Query: 8 gtcattatgctgagataa---tatcagttttactgtggactaaaagcctgagacataagg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gtcattatgctgagataatattatcagttttactgtggactaaaagcctgagacataagg 766
Query: 65 ttcatgttaatttccaagaccatgcaact-aaaaaatccagaataaatatttgaatctag 123
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 765 ttcatgttaatgtccaagaccatgcaactaaaaaaatccagaataaatatttgaatctag 706
Query: 124 gcaatctggctcaatcagtgccttcttagtcatttatagtaaagtgttgtggtcaaagca 183
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 705 gtaatctggctcaatcagtgccttcttagtcatttatagtaaagtgttgt-gtcaaaaca 647
Query: 184 ttggtggatttaagaagaaaatacagttccaaatcctaactgaggaagcaagaaggagat 243
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 646 ttgctggatttaagaagaaaatacaggtccaaatcctaactgaggaagcaagaaggagat 587
Query: 244 gtttttttttcattattgtaactgaggattaaccaataaacagtttgaacttttccttct 303
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 586 gtttagttttcattattgtaactgaggattaaccaataaaaagtttgaacttttccttct 527
Query: 304 aaggttacaggactacaagttacatcaaagcttccctacctggataccttcttatgcgta 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 526 aaggttacaggactacaagttacatcaaagcttccctatctggataccttcttatgcata 467
Query: 364 tgaaatttatttctctcgtgtcttaagaggatgaaacaatctcttgaacagcataggata 423
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 466 tgaaatttatttctctcatgtcttaagaggttgaaacaatctcttgaacagcataggcta 407
Query: 424 ctgcctttgntcttcttcttcttctttttta-attatagcattttttaa 471
||||||||| ||||||||||||| |||||| |||||||| ||||||||
Sbjct: 406 ctgcctttgctcttcttcttcttttttttttcattatagctttttttaa 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_l17.g1 MSMg01no463_l17.g1 CHROMAT_FILE:
MSMg01no463_l17.g1 PHD_FILE: MSMg01no463_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:16 2005
(456 letters)
>mm_chr1_69910212_69911068
Length = 857
Score = 822 bits (425), Expect = 0.0
Identities = 449/457 (98%), Gaps = 1/457 (0%)
Strand = Plus / Plus
Query: 1 tatttgctccccaaaccccaaaagagaattggtagtcttttctactttagcctttactcg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tatttgctccccaaaccccaaaagagaattggtagttttttctactttagcctttactcg 260
Query: 61 atttgatagtgatgtcttgtggttttgatatgcgatttgccaagagcaggtgataataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgatagtgatgtcttgtggttttgatatgcgatttgccaagagcaggtgataataaa 320
Query: 121 cgcaatattttgtgcttcttgtcccctttgcatttttggtatcagtactgccctttcatt 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tgcaatattttgtgcttcttgtcccctttgcatttttggtatcagtattgccctttcatt 380
Query: 181 taaagccatttgcctaattttgattaggtttttaattttgttactggattttatgatttt 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 taaagccatttgcctaattttgattaggtttttaattttgttattggattttatgatttt 440
Query: 241 ttt-ctcttttatatactagacactttgtatattgtatttcccttcagactgtggtttta 299
||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttctctttgagatactagacactttgtatattgtatttcccttcagactgtggtttta 500
Query: 300 cattttatttcattactatgatcttttaagagatttgattaaaagacttatatgcatatc 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattttacttcattactatgatcttttaagagatttgattaaaagacttatatgcatatc 560
Query: 360 tgtgtgctgtggtatttgtatctgggttcttccctcagatgtgttggttatttatagatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgtgctgtggtatttgtatctgggttcttccctcagatgtgttggttatttatagatt 620
Query: 420 ctttgctttttcacataaaatttacaatcaatagaaa 456
|||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgctttttcacataaaatttacaatcaatagaaa 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space: 377762
Effective search space used: 377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|