Query= MSMg01no463_p05.b1 MSMg01no463_p05.b1 CHROMAT_FILE:
MSMg01no463_p05.b1 PHD_FILE: MSMg01no463_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:33 2005
(476 letters)
>mm_chr1_65701399_65702274
Length = 876
Score = 905 bits (468), Expect = 0.0
Identities = 474/476 (99%)
Strand = Plus / Plus
Query: 1 gatggggctaagaggaggatgaaagtgacttagaagctgttaacacaagacacttttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatggggctaagaggaggatgaaagtgacttagaagctgttaacacaagacacttttggt 260
Query: 61 cttctctctttccgtagaatttccccagtatgtgtcagagtgagattgaataagagagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctctctttccgtagaatttccccagtatgtgtcagagtgagattgaataagagagac 320
Query: 121 aaactcaggcacactgatctctggcagaatccaagttagggtttatcaaaagacaatgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactcaggcacactgatctctggcagaatccaagttagggtttatcaaaagacaatgta 380
Query: 181 tatagcaagagagtggaaatgaatattatatgttttagaaatatagtaccatacaagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagcaagagagtggaaatgaatattatatgttttagaaatatagtaccatacaagcaa 440
Query: 241 aacaatcttcttcttcattggtgaaataagaacacatctttttcatgtacaagtatgggt 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaatcttcaacttcattggtgaaataagaacacatctttttcatgtacaagtatgggt 500
Query: 301 ttaggcagctccaatgtctactcgaaagcagagcaatgtggagaggaaacctgtgtaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaggcagctccaatgtctactcgaaagcagagcaatgtggagaggaaacctgtgtaatt 560
Query: 361 cttctggtaccactcaaaggttggaagaagacgctgcgtccgtcttttatctgactcaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttctggtaccactcaaaggttggaagaagacgctgcgtccgtcttttatctgactcaaa 620
Query: 421 gttgcaaaagaatatggggtagtgcaagtttgactaaatgttctgctgtctgagag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgcaaaagaatatggggtagtgcaagtttgactaaatgttctgctgtctgagag 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_p05.g1 MSMg01no463_p05.g1 CHROMAT_FILE:
MSMg01no463_p05.g1 PHD_FILE: MSMg01no463_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:33 2005
(537 letters)
>mm_chr1_65886046_65886981
Length = 936
Score = 1013 bits (524), Expect = 0.0
Identities = 533/536 (99%), Gaps = 1/536 (0%)
Strand = Plus / Minus
Query: 1 agtattcaatttctgttcacccaaaatgtaactaaaatcaatgacttttttttcagaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agtattcaatttctgttcacccaaaatgtaactaaaatcaatgacttttttttcagaatt 676
Query: 61 gaatttgaccaaaatgagatttttattttaatgtgatatagagtacaaccaagatacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gaatttgaccaaaatgagatttttattttaatgtgatatagagtacaaccaagatacaat 616
Query: 121 gattctaaatgttacattcatgttttaattttgcttatactcttaaaataccattaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gattctaaatgttacattcatgttttaattttgcttatactcttaaaataccattaaatt 556
Query: 181 agtgaattctaaaaatttcataagcatatacaaagtactcatttgtattaaaattcatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agtgaattctaaaaatttcataagcatatacaaagtactcatttgtattaaaattcatta 496
Query: 241 caagtattctatttataattattttaacaacatttcaacacagatcaaatgctaagcata 300
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caagtaaac-atttataattattttaacaacatttcaacacagatcaaatgctaagcata 437
Query: 301 tattgaatattatgaaaaaatgcaggatgaaaatataacctgtttcaagttactgtaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tattgaatattatgaaaaaatgcaggatgaaaatataacctgtttcaagttactgtaaaa 377
Query: 361 gaaagctacagatggaatatcaaagtatattcataaaaatacttttctacatagtaagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaaagctacagatggaatatcaaagtatattcataaaaatacttttctacatagtaagta 317
Query: 421 ctgttttaaaaaatcaaatttaattaagaagataaaaatactcggtataattacaatagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctgttttaaaaaatcaaatttaattaagaagataaaaatactcggtataattacaatagt 257
Query: 481 ttcacttttccccacacactgtagatcatcaaccattaaataaaatacaagtacaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttcacttttccccacacactgtagatcatcaaccattaaataaaatacaagtacaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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