Query= MSMg01no464_b21.b1 MSMg01no464_b21.b1 CHROMAT_FILE:
MSMg01no464_b21.b1 PHD_FILE: MSMg01no464_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:46 2005
(587 letters)
>mm_chr1_97873023_97874013
Length = 991
Score = 1064 bits (550), Expect = 0.0
Identities = 581/592 (98%), Gaps = 6/592 (1%)
Strand = Plus / Minus
Query: 1 agttattgttggattgaattttagggcaaccatttgctcttttaactaaactttattcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 agttattgttggattgaattttagggcaaccatttgctcttttaactaaactttattcaa 732
Query: 61 actagtcttgaatgttaggatgttcaatttttttattgaaaatatgagaatggtacacct 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 731 actagtcttgaatgttaggatgttcaa-ttttttattgaaaatatgagaatggtacacct 673
Query: 121 gtgatttattgacatccataattacaaccaaaagttcatctaccaacttttgaaaggctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtgatttattgacatccataattacaaccaaaagttcatctaccaacttttgaaaggctt 613
Query: 181 aacattttaacaatactgtatatgatatttattgatttaaatagtttggtcacattttga 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aacattttaacaatattgtatatgatatttattgatttaaatagtttggtcacattttga 553
Query: 241 acaagtacataaa-atttttttctgctcaatttctttatacaaagtatagaaatgtgtgg 299
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acaagtacataaatttttttttctgctcaatttctttatacaaagtatagaaatgtgtgg 493
Query: 300 tatttctgaatattgaaagaagaaaacataatataaaagggttaattgaacaaactttta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tatttctgaatattgaaagaagaaaacataatataaaagggttaattgaacaaactttta 433
Query: 360 aagggaacataatgaagacacaataatatttctcattatagtttgattcttactaatttg 419
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 432 aagggaacacaatgaagacacaataatatttctcattatagtttgattattactaatttg 373
Query: 420 tatgtaactgtcttagtgacagggctaaataaaatgtatcagcctaatttatttccatat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tatgtaactgtcttagtgacagggctaaataaaatgtatcagcctaatttatttccatat 313
Query: 480 tcagtatc--ttttttttccttt-a-aatgtctcttagattttatgagaaggactactaa 535
|||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 312 tcagtatcttttttttttcctttgagaatgtctcttagattttatgagaaggactactaa 253
Query: 536 aatatctcctttcaataagtatatccttttaatagacttaaagggagaggca 587
||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 252 aatatctcctttcaataagtatatcctttcaatagacttaaagggagaggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 991
Length adjustment: 10
Effective length of query: 577
Effective length of database: 981
Effective search space: 566037
Effective search space used: 566037
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_b21.g1 MSMg01no464_b21.g1 CHROMAT_FILE:
MSMg01no464_b21.g1 PHD_FILE: MSMg01no464_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:46 2005
(495 letters)
>mm_chr1_97753415_97754310
Length = 896
Score = 905 bits (468), Expect = 0.0
Identities = 489/496 (98%), Gaps = 1/496 (0%)
Strand = Plus / Plus
Query: 1 attacttagaaaatctaatgacagccaaagaaaactattttgatcaaaagagttcttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacttagaaaatctaatgacagccaaagaaaactattttgatcaaaagagttcttgaa 260
Query: 61 atgacaagaccatatttttaatttctctaatattcatccttgatgttttagagcaaaact 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 atgacaagaccatatttttaatttctctaatattcatccttgaagttttagagcaaaact 320
Query: 121 atttatatctagagaaaaattatttttaaaatgctatttatttttaaatgtatgagaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttatatctagagaaaaattatttttaaaatgctatttatttttaaatgtatgagaatt 380
Query: 181 ttcatgcctgtatatgagggcactgcacaggcatttggagcccatggaaactagaagcag 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatgcctgtacatgagggcactgcacaggcatttggagcccatggaaactagaagcag 440
Query: 241 atgctagattctctggaattggagttacaaacagttataacttgccatgtaagtgctggc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgctagattccctggaattggagttacaaacagttataacttgccatgtaagtgctggc 500
Query: 301 aataaaacctgggtcctattcaagagcatcaagttctcttagctgccaagccaactttct 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaaacctgggtcctatgcaagagcatcaagttctcttagctgccaagccaactttct 560
Query: 361 atcctgagagatatattttttt-atgtgtctgattgatcatttctataaaggttatatcc 419
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 561 atcctgagagatatattttttttatgtgtctgattgatcatttctataaaggttatattc 620
Query: 420 agtgctacttttggaacaaatgttttgaaagctcaacgaagattgaaagacatgttgtaa 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgctaattttggaacaaatgttttgaaagctcaacgaagattgaaagacatgttgtaa 680
Query: 480 atctctgcaaatgcct 495
||||||||||||||||
Sbjct: 681 atctctgcaaatgcct 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space: 429710
Effective search space used: 429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
