Query= MSMg01no464_i14.b1 MSMg01no464_i14.b1 CHROMAT_FILE:
MSMg01no464_i14.b1 PHD_FILE: MSMg01no464_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:20 2005
(289 letters)
>mm_chr1_70420666_70421355
Length = 690
Score = 499 bits (258), Expect = e-146
Identities = 282/290 (97%), Gaps = 1/290 (0%)
Strand = Plus / Minus
Query: 1 gaactgggattggaagtagtatgcaaggatccactgtgagcttttggcaagggtctaatt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 490 gaactgggattggaagtagtatgcgaggatccactgtgagcttttggcaagggtctaatt 431
Query: 61 gggatttcctcagactatgatttggtaagatgtggaaggaatccctgttctttaccaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gggatttcctcagactatgatttggtaagatgtggaaggaatccctgttctttaccaaca 371
Query: 121 acagagcaatgacctgaatgatgaaggatagatttccctccaaaaaaaataatactatga 180
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 370 acagagcaatgacctgtatgatggaggatagatttccctccaaaaaaaataatactaaga 311
Query: 181 atgaaagggagctaaccagaactgaatcttgccttccacatgaaaaacacctatataaca 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 310 atgaaagggagctaaccagaactgaaccttgccttccacatgaaaaacacctatataaca 251
Query: 241 aatt-ttatttatggggaacatccagtatatgtagaaattgccatgcata 289
|||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aattcatattcatggggaacatccagtatatgtagaaattgccatgcata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space: 190680
Effective search space used: 190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no464_i14.g1 MSMg01no464_i14.g1 CHROMAT_FILE:
MSMg01no464_i14.g1 PHD_FILE: MSMg01no464_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:20 2005
(483 letters)
>mm_chr1_70253431_70254313
Length = 883
Score = 439 bits (227), Expect = e-127
Identities = 260/271 (95%)
Strand = Plus / Plus
Query: 213 aaaagtttctaatgtgtgtttctagattttttctctcttaaagcaacaacatgtccatga 272
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 413 aaaagtttctaatgtgtgtttctagaaacttcctctcttaaagcaacaacatgtccatga 472
Query: 273 gcaatatagcgttgaagatcaccatcaaatcctctccattcctcattgtttccatcatgt 332
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 473 gcaatatagaattgaagatcaccatcaaatcctctttattcctcattgtttccatcatgt 532
Query: 333 actaccagacctctttaaagtgtagtacagtgtgttaggaaatgagcagattatcctggg 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 actaccagacctctttaaagtgtagtacagtgtgttaggaaatgagcagattatcctggg 592
Query: 393 tatgtgctaaattagctactgagtcaaaatacgttttttgctgaacattaagtgtttggt 452
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 593 tatgtgctaaattagctactgagtcaaaatacattttttgctgaacattaagtgtttggt 652
Query: 453 catttctgggtgaaagaaagaaagaaagaaa 483
|||||||||| |||||||||||||||||||
Sbjct: 653 catttctgggcaaaagaaagaaagaaagaaa 683
Score = 228 bits (118), Expect = 5e-64
Identities = 144/160 (90%), Gaps = 12/160 (7%)
Strand = Plus / Plus
Query: 52 cctctcttcattcctccctttcctttccactcaaagttgagatttatttatttatttatt 111
||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 1 cctctcttcattcctccctttcctttccactcaaagttgag------------attcctt 48
Query: 112 tatttatttatttatccttcaaatatcactggtactgtccacatgatctcaggattgagg 171
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 49 tatttatttatttatccttcaaatatcactggtactatccacatgatctcaggattgagg 108
Query: 172 tctgctctgacgtgtcattctgctttcatgcaatggcctt 211
|||||||||||||||||| |||||||||||||||||||||
Sbjct: 109 tctgctctgacgtgtcatcctgctttcatgcaatggcctt 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
