BAC Information

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BAC

Clone NameMSMg01-464I22
Chromosome1 (Build37)
Map Location 181,255,420 - 181,255,761
singlet/doubletsinglet
Overlap geneSmyd3
Upstream geneHnrpu, Efcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneLOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464I22.T7 (MSMg01no464_i22.b1)MSMg01-464I22.TJ (MSMg01no464_i22.g1)
ACCAG548944AG548945
length748791
length of high quality
(start - end)
269 (51 - 319)343 (72 - 414)
definitionCHROMAT_FILE: MSMg01no464_i22.b1 PHD_FILE: MSMg01no464_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:22 2005CHROMAT_FILE: MSMg01no464_i22.g1 PHD_FILE: MSMg01no464_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAAATCCGCGGA
ATTCTTTGCTATACCACACGAGTATTGGTCCGCCTTACACTGCATAGTTG
AGCTGCATTTGTCGGGACTCCATAGAAATGCACCAAAGAACTTCTGGTGA
TGTGCTGCAGTTTCTTGCTGCTTCCTCTGGACTCAGGATGATTAGCAGAG
TGATGTAGCTGAGACAGATGCACTTGTTCAGGCAAGGCAAGTAGAGGACA
TGTGATATTTGGAGGTTATAAATAAGACAGTGATGGAGGCTGAGCTAGGC
TTGCTTATATAGAGAGCTCTCTGTGCAGTGCTTGTGGGCCTCACATCTTC
GCTGATCTTCCCTTCCCTGAGAGAGGCACAGTCAAGAACTTTTCCTGGTG
CTCCTTCCTGCTGACATGAGCCAAGGCTGAGGGCTGGCTGTCTCTGCTAG
GTCATGTAACTACTGTTGCTAAATGACTACTGAACTGGACTGCTGGTGTA
TCCATGATGTGTTTATGAGTGGACTGAGCTGCCCCTGCTAATCTGTGAAC
TGAACTGCTGATTTCCAGACAACTCTTATGGGAGTCGCTCCAAAGAACTT
TTCTAAACATTTAATTTTCCCGTGCATCCTTTGCGTCTCCCCTACCTCCG
GTGTTTTGCTGCCCTTTTTCGTACTTCCTCTGCCTCCTTTGATTCCCCTT
CCTCCTCCCTTCCCCATTTTTCCCTACTTTTCCCCTTACTTGTGCGCT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTTTACTTTCTCCAATTGTTTATGCCT
GGAATCCCCATTTCAGTTAGCGCTTGTTAAGATGTTGGCCTTTTCCCATG
GAATAGGACAGCTTAATATATGGTTCTTATTAGTTTGTCTAGTTCGTTAC
CATTCCTCTGTCAAGCTAAATGGCTTTTAGATGACTCGTGCATTTAAGTC
TGTTCAAAAGTTGTTAAGGTTTGTAATTTATCATATAACCATTTCTGACC
TTGTTTGGTCCCTGACTATATTGTATGTTCATTGAATATATATTGAAGAA
TATGAGAAACATTAATGTCGCACTAAAAGCATTAGCAGTAAGCGTGTGTG
TGTGTGTGTGTGTGCGTGCGTGATCGCATGCGCGAGGTGCCTAACTTGTT
GCTGCTGCTCAATCATAATGCTCCATTTCTTATATTTGGTATTGACGACA
TTCTCCCTTCACTTACCCTTTCTTATCTTCTTTCTCCTTTAACATTATCC
TCCTCTCTTTCTCTCTCATTCTTCATCCTTGTATTTTACACTTTCTGCAT
ACTCTCACCTTCCCATTTGCTCTTTACCCCCTACTCTCCTTTCGCTCTCA
TCTTTCTTCCTTTTTCTTTTTTTTCCTCCCTTTTTTTTCCTTTTCCTTCC
TTTTTCTTGCCTTTCACTCTTCTTTCTTTCATTTTTCCCTTTTTTTTTTT
TTTTCTCCCATGTTTCTTACCCTCTTTTTTCTCTCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_i22.g1 MSMg01no464_i22.g1 CHROMAT_FILE:
MSMg01no464_i22.g1 PHD_FILE: MSMg01no464_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:22 2005
         (343 letters)



>mm_chr1_181255241_181255982
          Length = 742

 Score =  586 bits (303), Expect = e-172
 Identities = 333/343 (97%), Gaps = 1/343 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttttactttctccaattgtttatgcctggaatccccatttcagttagcgcttgttaag 60
           ||||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 521 ttttttactttcttcagttgtgtatgcctggaatccccgtttcagttagcgcttgttaag 462

                                                                       
Query: 61  atgttggccttttcccatggaataggacagcttaatatatggttcttattagtttgtcta 120
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 461 atgttggccttttcccatgggatagggcagcttaatatatggttcttattagtttgtcta 402

                                                                       
Query: 121 gttcgttaccattcctctgtcaagctaaatggcttttagatgactcgtgcatttaagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gttcgttaccattcctctgtcaagctaaatggcttttagatgactcgtgcatttaagtct 342

                                                                       
Query: 181 gttcaaaagttgttaaggtttgtaatttatcatataaccatttctgaccttgtttggtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gttcaaaagttgttaaggtttgtaatttatcatataaccatttctgaccttgtttggtcc 282

                                                                       
Query: 241 ctgactatattgtatgttcattgaatatatattgaagaatatgagaaacattaatgtcgc 300
           ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctgactagagtg-atgttcattgaatatatattgaagaatatgagaaacattaatgtcgc 223

                                                      
Query: 301 actaaaagcattagcagtaagcgtgtgtgtgtgtgtgtgtgtg 343
           |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 222 actaaaagcattagcagtaagcgtgtgtgtttgtgtgtgtgtg 180


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 742
Length adjustment: 9
Effective length of query: 334
Effective length of database: 733
Effective search space:   244822
Effective search space used:   244822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)