BAC Information

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BAC

Clone NameMSMg01-464P08
Chromosome1 (Build37)
Map Location 174,166,735 - 174,166,975
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Downstream geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464P08.T7 (MSMg01no464_p08.b1)MSMg01-464P08.TJ (MSMg01no464_p08.g1)
ACCAG549251AG549252
length739727
length of high quality
(start - end)
189 (130 - 318)241 (79 - 319)
definitionCHROMAT_FILE: MSMg01no464_p08.b1 PHD_FILE: MSMg01no464_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:53 2005CHROMAT_FILE: MSMg01no464_p08.g1 PHD_FILE: MSMg01no464_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATACATCAAAATTTGCGGGCGCTAAAAGAANCACTATTTCTTTACCAG
CCGNGGAANNCNNCAATTATCAAACAAACTGNGGAAGTGTAAACCAAATA
AATCCTTTCCTCCCTTATCTGTTTTTCGGTCACAGTGTTTTGTCATAGCA
ATCAAAACCCTAACTAAGGCAACACACATGTGCACAGGCATTCACACCCA
CACAAGAACAAGTGCACATACATATACACAGAATACATACATCTTCACAT
ATGTATGTATGAACATACATGCACACATATATTTCCATAGGCTAGATATG
ATCATGGGCCTCTAAGGTGTTCTCTTTTTTCACCGAGACAGGGNCCTACA
TGCAGACCTAGCTGTTTTGCAACTTACTATGTAGACCAGGCTGGCATCAA
ACTCACAAAGATCTGCCTGCCTCTGGTATTAAGGCATGTGTGTCACCATG
CCCTAATAATGTGCAACTTTAAATTAAATGTGCTCTATTATGTAACTAAT
GCGCCCACATCCTATTACACAGGCTAAATCAACCTTAATTGATTTACTAC
CGGACCATTTGAAATAACCATAATCAAGCATTTCTTTATTTGTTTGTTTC
CATCTGCTTCGCTTGCTTTGCTTTTCTGCCTCGATCGCCCCTCCGAATAC
CTACTTTTTTTTGTCTACACCTCGCCTTTCCCCGTATTTTCAACTTCCCC
TACCTACCTTCCCCCTTCATTCCCCCACCTTTTTATCCG
TTCTTACGATGATATGTGTAGCCTGGNGGNCGCCTGTTTTCAAACATGAN
GNGACCTATAGAAGTACCAGAAGAATTCATTAAGTTCTGGAAGGATTTGA
TTTCCCATATGTTGGAGCCTCCTATACCTCTCATGTTCTCACAGAGTGGT
ACCAACTAGTCTTGTGTTCCTGTCCACCCTTTTCTCCCAGATCAGACCAT
CTGAAACTTTCAAATGTCAGTAAGAAAGCTATGTCGCTAGGACAGCTTTC
AATTCTTGGCTTCTTTGTAGAGGGAACCAGGCTTATAATGCGACATGTAT
TTTTATTCTACTGAAATCTTATTTTTTAATATGATGGGAGTATTTTCTAA
TTTTTTAAATAATCATATTTGCTTCTAAGTCATGGGCATAGGGCTACCTG
CTCAGTCCTGTTATCATTCCCTTGCAAAACGCTTTGGTTCCATGCATCAA
TTATATGACTTCTTTTATTCTGTAGTCTGTGATAGTCATCAGCTGCGTGT
CACCACCTTTCGGCTTAGCGCACGATGCTTGACTCTGGAATGTTTTGCTT
CAGAACAACCTCCTCTGTGTCACCTACTTTTTGTACTTTTTGACAGATGA
TGCTTTTCCCCTGTTCCATACTTCCCTTTCTTTACACAGATCGATCCTCT
TTTTCCCATCTTATTCCGTCCGCTTTTTTCTTCTAGTTACCTGTTCCGTC
TATTACCACGTACCCTTCTGTCATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_p08.g1 MSMg01no464_p08.g1 CHROMAT_FILE:
MSMg01no464_p08.g1 PHD_FILE: MSMg01no464_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:53 2005
         (241 letters)



>mm_chr1_174166535_174167175
          Length = 641

 Score =  427 bits (221), Expect = e-124
 Identities = 236/241 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaagttctggaaggatttgatttcccatatgttggagcctcctatacctctcatgttc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 attaagttctggaaggatttgatttcccatatgttggagccacctatacctctcatgttc 260

                                                                       
Query: 61  tcacagagtggtaccaactagtcttgtgttcctgtccacccttttctcccagatcagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacagagtggtaccaactagtcttgtgttcctgtccacccttttctcccagatcagacc 320

                                                                       
Query: 121 atctgaaactttcaaatgtcagtaagaaagctatgtcgctaggacagctttcaattcttg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||
Sbjct: 321 atctgaaactttcaaatgtcagtaagaaagctatatcgctaggacagctttcaaagcttg 380

                                                                       
Query: 181 gcttctttgtagagggaaccaggcttataatgcgacatgtatttttattctactgaaatc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttctttgtagagggaaccaggcttataatgcgacatgtatttttattctactgaaatc 440

            
Query: 241 t 241
           |
Sbjct: 441 t 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)