BAC Information

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BAC

Clone NameMSMg01-465C23
Chromosome1 (Build37)
Map Location 50,917,431 - 50,917,880
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465C23.T7 (MSMg01no465_c23.b1)MSMg01-465C23.TJ (MSMg01no465_c23.g1)
ACCAG549424AG549425
length7811,204
length of high quality
(start - end)
452 (36 - 487)---
definitionCHROMAT_FILE: MSMg01no465_c23.b1 PHD_FILE: MSMg01no465_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:11 2005CHROMAT_FILE: MSMg01no465_c23.g1 PHD_FILE: MSMg01no465_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCA
GTTCACATGTCTTTTAAAAACAACACCATTTTTAGTAGTCAATCACTAGG
GCTAACCTAGATTTTAGTTCGAAGGCTTAGTCTGAGTATGTTTGCCTGTT
CCCAAGGTATTAATGGATCCCATTTGATTAGACACACAGAATTTAATTTT
AAATGGGTTCTACATAATCAGTGATTCCTCTCACTCCATTGTATCATATG
TACATGATGCCAAAACAATTTTGTTACCAGAGATCATTAATTTAATGTCC
ACCAAAGCAAAGACAGAACATTTGTGGAGGCAGTGACCACATTAAAATGC
AGATACTTTAAAAATTCCATTTCACCAGAATGAAACATTTAGAGGCAGAC
ACTATATGTATAGCCTAGGCCACATTAATGTTTATGAGGGGAACAGCTAA
ATAATGCAGATGCTATGATATACTAAAGATTATCTCAAAGCCAAACTGTG
AGGAANAACTATTCAACTTAAAGCAAACAATATTCCTTAAAATGAAGATA
TTTAGATTTTTAAAAAACATATAAAATGAACAGTAATTTATCCTGTGGAT
CTCATGCTTACCTGAAAAGCTGCCGATAATAAAAGAGAAAATGCCCGGAA
GTCTTTTTTAAGGAAAAGCTGAACCTATTAATGCCCTTTCTTCAAAAAGA
TCCCCGCTAAGGCTTTTGTTTTTTGACTAAGCCCGCCCCATTGTTTTAAA
AATTGGCTGGCCCGGGCTACAATTCTTCCTC
ATTTCACNTCTNTGGTCCCGCAGCCAACAGCCCACCCCAATAATATATCG
CGCGCTATGCCGATAGAAGACAGGTATTATTGTGGTGATCACAATATTCA
ATATTTAAATTACTAGAGAATATATAACGCATACCTAAAATACAATCTAT
CACTCTTATACGCGTATTACCAACATCCAGTCCGTAGACGTGTCTGCCGC
ACGCGCTCGCCGTGCACGTATGCCAAATTAACATATATTATTACTGAAAT
ACTCGCCTACCTCTCCTTCCTCTCATCCCACTTTTTTCCTTCCTCGTTCT
TCCCCTCCGCGTACACTCCATCGCTAACCAGCTGTAGATGTGTATCTGTC
GGCGACGCTCAGCAACATAATCTATATAAACGTATGGCGGCCCGCACATC
CGCAGCCGCGTGCTAGTGAAAAGCACAATAGTTCACTAATGAGGCCAGAC
AGTAACCAGGTTGCACACCACCGCGGCGTAGTGTCTCCCACCTATTCATT
CGTCTTTACTTAACCAACGAGAACAATCGACTCATTCGAAGTGTATCACC
ACGAATAGTACTTNTAAATACGATATCGCACTGCACTATATGTTATCTAG
GATTATAATTTTGACAGTACTTACAACAGCATTTACTACCACACCGAACT
AAATATATCGATGATAGTCTGTGTAAAGGTGGCTGTGATGACAAGTCAAG
CGTTGAGTGTTGTTGGATGATACGACAGGTCAACGATAATACTTAACAGC
GTATGTAATATCTGAAACTTAATCACTGGTGAATACGATCACGACAACCA
CAACAACAAATACTCATTGCACCACACCGTCTATAAATATGTTGCAGCGT
GACTATTATAACTGTCCGGACGCACTGAACGGAATTACACTGTCGTCGGA
CATGTACTACGATATAAATCGATGCTGGATTATCGACCGCCACTCTAACA
TAATCCCAACCTATCAACACAAGCGCCGCGCTCCACTTCGTACGCGCCAG
CACTCAACAACCTCACATATTTGTGACTCGCGGTGACATGACCAGCTGAC
TAGTGCAATATCCACGCGTCCCCGACGACCGCGGATAACACATCGCAGTC
CGTCTGATATTATACTAACATAGCGTGCGAAAGAAGACGAAGATGACGCG
CAACTACGAGCGAACACCGCTATATGGATGCGTGTTTAACGAACGTTGTA
AGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_c23.b1 MSMg01no465_c23.b1 CHROMAT_FILE:
MSMg01no465_c23.b1 PHD_FILE: MSMg01no465_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:11 2005
         (452 letters)



>mm_chr1_50917228_50918080
          Length = 853

 Score =  808 bits (418), Expect = 0.0
 Identities = 442/450 (98%), Gaps = 1/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttcagttcacatgtcttttaaaaac-aacaccatttttagtagtcaatcact 62
           |||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 653 ggaattctttcagcccatatgtcttttaaaaacaaacaccatttttagtagtcaatcact 594

                                                                       
Query: 63  agggctaacctagattttagttcgaaggcttagtctgagtatgtttgcctgttcccaagg 122
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 593 agggctaacctagattttagttcaaaggcttagtctgagtatgtttgcctgttcccaagg 534

                                                                       
Query: 123 tattaatggatcccatttgattagacacacagaatttaattttaaatgggttctacataa 182
           ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 533 tattaatggatcccatttgattagacacaaagaatttaattttaaatggattctacataa 474

                                                                       
Query: 183 tcagtgattcctctcactccattgtatcatatgtacatgatgccaaaacaattttgttac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcagtgattcctctcactccattgtatcatatgtacatgatgccaaaacaattttgttac 414

                                                                       
Query: 243 cagagatcattaatttaatgtccaccaaagcaaagacagaacatttgtggaggcagtgac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cagagatcattaatttaatgtccaccaaagcaaagacagaacatttgtggaggcagtgac 354

                                                                       
Query: 303 cacattaaaatgcagatactttaaaaattccatttcaccagaatgaaacatttagaggca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cacattaaaatgcagatactttaaaaattccatttcaccagaatgaaacatttagaggca 294

                                                                       
Query: 363 gacactatatgtatagcctaggccacattaatgtttatgaggggaacagctaaataatgc 422
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gacactatacgtatagcctaggccacattaatgtttatgaggggaacagctaaataatgc 234

                                         
Query: 423 agatgctatgatatactaaagattatctca 452
           ||||||||||||||||||||||||||||||
Sbjct: 233 agatgctatgatatactaaagattatctca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 853
Length adjustment: 10
Effective length of query: 442
Effective length of database: 843
Effective search space:   372606
Effective search space used:   372606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)