BAC Information

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BAC

Clone NameMSMg01-465I09
Chromosome1 (Build37)
Map Location 67,151,370 - 67,151,613
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
Downstream geneCps1, Kif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465I09.T7 (MSMg01no465_i09.b1)MSMg01-465I09.TJ (MSMg01no465_i09.g1)
ACCAG549683AG549684
length766750
length of high quality
(start - end)
244 (69 - 312)381 (68 - 448)
definitionCHROMAT_FILE: MSMg01no465_i09.b1 PHD_FILE: MSMg01no465_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:39 2005CHROMAT_FILE: MSMg01no465_i09.g1 PHD_FILE: MSMg01no465_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGAGGAGCCGCGGAATTCA
TATGTTCCCACGAATGTACATGAATATGGCTTTCTCCAGCTATTTTCAAA
AACAAGTGTGCAGCCTACCAGGTGGCATATTACTCACCGAGAGTTCAAGC
ATTACCTAGCAATATAGGAAGAAATGGGGTGTGAAATATGAGACTCTAGA
AAGAAATAACTACAATAGTAGACCCTAAATTCTAAGACAAATGATTTGAT
TGCTCAAAAGTGAGGAGATGTCTCAGTCAGTGGTGGCACATACCTTTAAT
CCCAGCACCCTAGAGTCATGGGAATCTCTGAGTTCGAGGACAGACAAGTA
AGTCTCCAGAGCAAGTTCTGGGACAGCCAAGGCTACACAGAGAATCCCTG
ACACATGCATGTGCACATATGTACCTACGTGTACACACCACACACACACA
CACACACACACACACACACACACAAAAATCACAGCTCTAAAAACTACTTG
AGGCAGATTCTGAAAGATCCATACCGTAAATATATGAATTCTAAAAATAC
GAAAAAAGATGAGAAAACTAAAACTTTTGGATTTTAAAGGCGGCTCTGTT
TCTGAAAAAAATCATCTGGGAGGTGGGGGGGGCACAACTAAACCCGCCCC
TTTTTTTTTTTTTTTTTCTTTTTCCCCAATTCCTACCCCCCTGGGGGCTA
CTATACCGTTCCAAATCTATAGATCTCCGCTGTTTCTAGTTACCCCCCTT
CTTATTTTTATAATTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCTCATGTTGTGGACAAAAAGTAAACATATTG
GGTACATTTTAGATCAAAGTGATCAAATAGTTGGCCAAATCAACTTAAGA
GGAGATTTACTTTGACTCACAGTTGCAGAGGGGTCAGCCCATGGTTGCTT
GGCTCTATACACTTGGTGGAAGAAAGTCATATGAAGGGCATGTTGGTATT
TATCTGGCTTGCTTCTTTCTCCTTTTAATTCTGAAGTCAGCAGCCCATGG
AACCGTGCTGTTTTTTTTGGTGTGGATCTTTCCCATGAGTTAATCTTCCC
TGGAAGTGTCCCTCTAGGCACCACCAATCCTGTACTTGCTTCTAAATCTA
ATCAAGTAGACAATAGGATCCAACTATGATAGTAAGTATGATATGTCTGG
AAGCCTGCCTGTCTAACAACAGGAAGCCAATGATTTAGATTTGGCTCATG
CTGCTAAATCACATAAAACTCTCACTGCGTCTATTTAATCCCCTTCATCT
GAAGGATTAAAACTATTCTATTTCCCCTCCAACACGTTCCTTGGGTTTTT
CTTGCTCTGGGCTCCGCTAGGTGTTTCCCCCGTAACAACAATTAATTTTT
TTTTTTTCCAGGTACCACCCCCACTCCCCTACATCCCTTACATTTTATTT
GTGTATTATACCCACCCCCCCCCTCTCCACTTTGTAATTTGTTTCTCTTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_i09.b1 MSMg01no465_i09.b1 CHROMAT_FILE:
MSMg01no465_i09.b1 PHD_FILE: MSMg01no465_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:39 2005
         (244 letters)



>mm_chr1_67151209_67151852
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaatatggctttctccagctattttcaaaaacaagtgtgcagcctaccaggtggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 405 catgaatatggctttctccagctattttcaaaaacaagtgtgcagcctagcaggtggcat 346

                                                                       
Query: 61  attactcaccgagagttcaagcattacctagcaatataggaagaaatggggtgtgaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 attactcaccgagagttcaagcattacctagcaatataggaagaaatggggtgtgaaata 286

                                                                       
Query: 121 tgagactctagaaagaaataactacaatagtagaccctaaattctaagacaaatgatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 285 tgagactctagaaagaaataactacaatagtagaccctaaattctaagacaaatgaaaag 226

                                                                       
Query: 181 attgctcaaaagtgaggagatgtctcagtcagtggtggcacatacctttaatcccagcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 attgctcaaaagtgaggagatgtctcagtcagtggtggcacatacctttaatcccagcac 166

               
Query: 241 ccta 244
           ||||
Sbjct: 165 ccta 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)