BAC Information

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BAC

Clone NameMSMg01-465P12
Chromosome1 (Build37)
Map Location 156,376,634 - 156,376,825
singlet/doubletsinglet
Overlap geneCacna1e
Upstream geneNpl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465P12.T7 (MSMg01no465_p12.b1)MSMg01-465P12.TJ (MSMg01no465_p12.g1)
ACCAG550024AG550025
length777758
length of high quality
(start - end)
192 (315 - 506)489 (66 - 554)
definitionCHROMAT_FILE: MSMg01no465_p12.b1 PHD_FILE: MSMg01no465_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:16 2005CHROMAT_FILE: MSMg01no465_p12.g1 PHD_FILE: MSMg01no465_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAAACACGATCCGCGGAATTCTCC
ATTTCCAAGAAATAGATAGAATTTGAGTTGGAGCGAGGCTACAAGCCACA
AATGTGGTAACCACATGGGCCCGAGTGAGTGAAAGCTACCACACTGGGGA
AACATGTGGGCTGCAAAGCAACAGAGCCAAGAGAGGCAAGAGCTAAGTGT
TCCCTAGCTCATGTTCTCTGTTCTGCATGCACACTAGCCTATGTGACCCT
GCCTTCCATTCTCCTGCTTCCTGACGGGAAACCAAGAATGACTTTTGCCT
ATTACCTTTTTTAGGGCCATTCAACAGCAAACCTTACCACACCCTGTCCA
TGGTCTTCATCCTTCTCAGGGAACACATGTTGCCCAATTAAGAGTCTCTT
CTAGTCATGATGTGTTAGAACATTTTATGAGGTCTTTTTCTTCCCTTAGG
TTTCTCCTTTTCCAGTTCCTACATTTCTGACCACAGCCTCTCAGCATTCC
TCAGAGTAGATAGAGCCATATTTATGTCTTAGTGCCTGTGGGTACTGTAA
CACAATACCACAGACTTGGTGCCTTATAACTAAGGAAAAATGGTTTTCTA
TCCTGGAGGCTGTAAGACCAGATTCAACCCATGGGAGACCCCGTGGGAGG
CCACTCTCTTTGCGGCCCCCTTAGAACAAGCCCAACAAGGAGGTCCCCTG
GGGGGGGTCCAAAAAGAAATTTCCCCCCAGGAGACCTCCTTCTTACCCTA
TCATGAGGGCAAAAGAGCCCTCCCCCN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACAACAGAGGAATTTTGAATGGCCGAGAAGCACCT
AAAGAAATGTTCAAAGTCCTTAGTGATCAGAGAAATGCAAATCAAAGGAC
CCCGAGATTCCACCTTACAGCAACCAGAATGGCTAGGATAAAACCTCAGG
TGACAGAACATGTTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCACA
GCTGGTGGAATTGCAAACTGGTACAACCACTCTAGAAATCAATCTGGAGG
TTCCTCAGAATATTGGAAATAGATCTACCTGAAGACACAGCTATACCACT
CTTGGGACTATATCCAAAAGATGTCCCACCATGCCACGGGGGCACGTGTT
CCACTATGTTCGTAGTGGCCTTATTTGTGATAGCCAGAAGCTGGAAACAA
CCCAGATGTTCCATGACAGAAGAATGGATACAGAAAATGTGACTCATTTA
CACAATGGAATACTACTCAGCTGTTAAGAACAAGGACATCCTGAGTTTTT
CAGTATGTGATCTTAACCATGGAGCCATCTCTCCAGCACCTATATTTAAT
TCTCTCATCCAAACCCTTGTGAAGGTCAGTCCATAGGGTTTATAGGGATT
CCCCTCAAGAGCTTTTTACCTAGATGATAACCATGTCTCGCGAAGGAGAA
TTTTAATCCTTCCCTCTCCCACCCGAAAAAGACTCATCCGTGGTTTCCCT
ACCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_p12.b1 MSMg01no465_p12.b1 CHROMAT_FILE:
MSMg01no465_p12.b1 PHD_FILE: MSMg01no465_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:16 2005
         (192 letters)



>mm_chr1_156376434_156377025
          Length = 592

 Score =  371 bits (192), Expect = e-107
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggccattcaacagcaaaccttaccacaccctgtccatggtcttcatccttctcagggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggccattcaacagcaaaccttaccacaccctgtccatggtcttcatccttctcagggaac 333

                                                                       
Query: 61  acatgttgcccaattaagagtctcttctagtcatgatgtgttagaacattttatgaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 acatgttgcccaattaagagtctcttctagtcatgatgtgttagaacattttatgaggtc 273

                                                                       
Query: 121 tttttcttcccttaggtttctccttttccagttcctacatttctgaccacagcctctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttttcttcccttaggtttctccttttccagttcctacatttctgaccacagcctctcag 213

                       
Query: 181 cattcctcagag 192
           ||||||||||||
Sbjct: 212 cattcctcagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)