BAC Information

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BAC

Clone NameMSMg01-466G03
Chromosome1 (Build37)
Map Location 77,709,570 - 77,709,882
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466G03.T7 (MSMg01no466_g03.b1)MSMg01-466G03.TJ (MSMg01no466_g03.g1)
ACCAG550342AG550343
length784789
length of high quality
(start - end)
75 (77 - 151)314 (75 - 388)
definitionCHROMAT_FILE: MSMg01no466_g03.b1 PHD_FILE: MSMg01no466_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:51 2005CHROMAT_FILE: MSMg01no466_g03.g1 PHD_FILE: MSMg01no466_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCAATTTGCGCTCTTTAAACGACTCCCTTTCCTAACAGGATCCGCGG
AATTCATTTTTCCCTACAAAGAGAAGACTTTTCACTGTGCTACATATATA
TCTAATTTTTTCCCATGTATTTATGTGAATGGGAATCTTGCCTGCTTATG
CATTTGTGCTTCATGTGCATGCCTGTTATGTAAACACAGAGATCACAAAA
AGGTATTTGGTCCCCTGGAACTAGAGTTATAGATGGTTGTGAGCTGCCAT
GCACGTTCTGGTAATCAAATCCTTATCCTCTGGAAGAGCTTCCATTGCTC
TTAACCACCGATTTATCTCTCCAGCCTTGTTTAGTATATTTTGATGATTA
ACTCACGGACATGCATATTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCC
CTCTCCTTCTCCTTCTCCTTCTCCTACCCCCTCTCCTTCTCCTTCTCCTT
CTTCCTTCCCCTTCTCTTTCTCCTTCCCCCTTTCCCCATTCCTTATCTCT
ACTTTTTTTATTTCCCCCCTTCTCACTTCTTCCTCCCCCACCTCTCTCCT
CCTTTCTCTCCTCTTTCCTCTATCCACTCTTCGCCCTCTCTCTATTTCTT
CCTCTTCAACATAATCACCTCCCCCTCTTATTTTCCACCCATCCTCTCTC
TCCTTTTATCCTTTCCCAACTATTTATTTTTACN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGTAACTGGATATTATCTTAGAGGT
GTCCCCGCCCATCTTCAGACACCCAGGCAGACACGTGCTTGCTGAGTGAT
TTGCCTTTGAAAGCCATGACTGTATTAGGTGACCTTGCTTTCTTGGCCCA
GAATAATCATCCCAGGGACCAAATGTCTAAGATCTCCACTCTCAGAAACA
CAAAGAAAGGAGTTCTAGTCAGATGGCTGGGGATGAAGTGTGGAGCTGGC
TACAAGCTCATATATGTCCTGATGGTGAGTCTGTGTTACTGGAGCCTGTC
AGACAAATTCTGTAAAAGCAGGACTGGACCAGATGTTCAGGGAGAACAGA
TAAGAGACTGGGCAAGCTCGATGGGAAAGAAAAAAATATATATCTGATGA
CATTCCACCTTCTGAAGATTTGGAGCTGTTAGCTGATATGTCTCTGTATT
GCCATATTAACCCCCTGCCTCTCTACACCTTTTGTTGCAAGCTACTCTTA
TCACTTTCCCTGCCCCTTTACTTCTTTGATCTTGATATAATCTCCTGTTC
CCACCCCCCTATATTGTTTTTTAATCTTTCCTTGTAATACCTTTTTCCCC
TTAATCCATTTCCTCCCTTTCCTAAGCTTTTCCACTTTTTATAGTCCTCT
ACTCCCGCTTTATCCTATACCCATTCTCCTACCACTCCCATTCTTCACCC
TCTATTATCCTCCCCTCCTAATACTTTTTTTATAATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_g03.g1 MSMg01no466_g03.g1 CHROMAT_FILE:
MSMg01no466_g03.g1 PHD_FILE: MSMg01no466_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:51 2005
         (314 letters)



>mm_chr1_77709370_77710082
          Length = 713

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtaactggatattatcttagaggtgtccccgcccatcttcagacacccaggcagacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 513 ttgtaactggatattatcttagaggtgtccccgcccatcttcagaca-ccaggcagacac 455

                                                                       
Query: 61  gtgcttgctgagtgatttgcctttgaaagccatgactgtattaggtgaccttgctttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtgcttgctgagtgatttgcctttgaaagccatgactgtattaggtgaccttgctttctt 395

                                                                       
Query: 121 ggcccagaataatcatcccagggaccaaatgtctaagatctccactctcagaaacacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggcccagaataatcatcccagggaccaaatgtctaagatctccactctcagaaacacaaa 335

                                                                       
Query: 181 gaaaggagttctagtcagatggctggggatgaagtgtggagctggctacaagctcatata 240
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct: 334 gaaaggagttctagtcagatggctggggatggagtgtggagctggctacaagctcagaga 275

                                                                       
Query: 241 tgtcctgatggtgagtctgtgttactggagcctgtcagacaaattctgtaaaagcaggac 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tggcctgatggtgagtctgtgttactggagcctgtcagacaaattctgtaaaagcaggac 215

                         
Query: 301 tggaccagatgttc 314
           ||||||||||||||
Sbjct: 214 tggaccagatgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)