Query= MSMg01no466_k09.b1 MSMg01no466_k09.b1 CHROMAT_FILE:
MSMg01no466_k09.b1 PHD_FILE: MSMg01no466_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:12 2005
(475 letters)
>mm_chr1_71190600_71191475
Length = 876
Score = 874 bits (452), Expect = 0.0
Identities = 470/476 (98%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 1 aatgacctaataatttctcttttctctgtctaataggccagactactaaatatgttgccc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aatgacctaataatttctcttttctctgtctaataggccagacaactaaatatgttgccc 260
Query: 61 tcttcatcctggaaaattgtgtctttcagatcctatgcttatcattttccttttcttata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcatcctggaaaattgtgtctttcagatcctatgcttatcattttccttttcttata 320
Query: 121 caagttagtattttccctgccaataaattttt-gtagacaatgggaggcttcatgggaca 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 caagttagtattttccctgccaataaattttttgtagacaatgggaggcttcatgggaca 380
Query: 180 ctattatgagttgaatatccctgcaacaaatctgcacttttttctacaaaggaattcttc 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctattataagttgaatatccctgcaacaaatctgcacttttttctacaaaggaattcttc 440
Query: 240 tcaagtagctgctgagaaaagaacatttatctctaggtactatatattcccctgagaaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaagtagctgctgagaaaagaacatttatctctaggtactatatattcccctgagaaac 500
Query: 300 tatttgtcattttaacaaatcatttatcaacttgctttctttagtctgaatgaatggaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttgtcattttaacaaatcatttatcaacttgctttctttagtctgaatgaatggaag 560
Query: 360 gaaaacacaagatttataagtggctctcaagcttcattcatctcaggacccaacgcatca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaacacaagatttataagtggctctcaagcttcattcatctcaggacccaacgcatca 620
Query: 420 cgctaggacaagcaaacatctggatacaggaaatgtttctactacttcccccttag 475
| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 cactagtacaagcaaacatctggatacaggaaatgtttctactacttcccacttag 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no466_k09.g1 MSMg01no466_k09.g1 CHROMAT_FILE:
MSMg01no466_k09.g1 PHD_FILE: MSMg01no466_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:12 2005
(366 letters)
>mm_chr1_71386505_71387270
Length = 766
Score = 654 bits (338), Expect = 0.0
Identities = 359/366 (98%)
Strand = Plus / Minus
Query: 1 agaattatgctttcttgtctgcatttgcccgtttttaaacaagtagccttctgcttttgg 60
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 566 agaattatgcttttttgtctgcatttgccggtttttaaacaagtagccttctgcttttgg 507
Query: 61 attctaaagtaagcatactgcgagcgtcagacaaaaagctcctcgtgttgtctcagttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attctaaagtaagcatactgcgagcgtcagacaaaaagctcctcgtgttgtctcagttgc 447
Query: 121 cttaagaaaggcaggtgctagaagcctgggaagaattctcagtgcagagtccgacatact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cttaagaaaggcaggtgctagaagcctgggaagaattctcagtgcagagtccgacatact 387
Query: 181 tatataccagcttttgctggccaagagacgtttcctatctacagttacgaattagttttt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 386 tatataccagcttttgctggccaagagacgtttcctatctacagttacgaattagtgact 327
Query: 241 tttttgcatggttgattgtttctaatgctaatgtttttatgaacaccaggagaggtttac 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 326 cttttgcatggttgattgtttctaatgctaatgtttttatgaacaccagaagaggtttac 267
Query: 301 tctcttaaaagtctaggccagagaactagacagtgtgttaattacttcttgtggattttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tctcttaaaagtctaggccagagaactagacagtgtgttaattacttcttgtggattttt 207
Query: 361 tttaat 366
||||||
Sbjct: 206 tttaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
