BAC Information

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BAC

Clone NameMSMg01-466O01
Chromosome1 (Build37)
Map Location 67,307,042 - 67,307,487
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466O01.T7 (MSMg01no466_o01.b1)MSMg01-466O01.TJ (MSMg01no466_o01.g1)
ACCAG550721AG550722
length774911
length of high quality
(start - end)
446 (68 - 513)76 (77 - 152)
definitionCHROMAT_FILE: MSMg01no466_o01.b1 PHD_FILE: MSMg01no466_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:33 2005CHROMAT_FILE: MSMg01no466_o01.g1 PHD_FILE: MSMg01no466_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTCTATTTGCGACAGCCAAACGACCCCCTTTCATAAGAGGACCGCGGA
AATCTATATTCCCTCTGCTTCCCCATCTCTTAGATATAATTCCAAGAAAC
ATCTCCAAGGAACCTCCATCCCTGCTCCAAATATTATCAACCTAGCAAAC
ACTGTAGCTGAGCGATTTGCCTCATCTTGCCAGATAGAGACTAGGATCTG
AATCCAAACCAGGGATGTGGTGCATTATAGAATCATAATTTCTTAGAAAC
ATTGCTGGATGCTTGCCAAACAAGTGCAAGAGCCCAACCTGGAGCATCTT
AGATTACCTCCTGGGGCATATGTTGTTAATACTTTTCACCTTGCTGATAA
GATGGTTAAGTACCTCAAGTCCTTTATTTGTTAAAAACCTTAGAATGGAT
CAGTTTCAAATTCTTAATCTCAAAGACTTTTCATCAAGAAGACCCAAGGA
AGACTTGTAATTTCTGCTGGATTCCTTGACAGGTGAGAAAAGCCATTGCC
CTTCGCTTCCTACACTAAGCCCACAGAAACAACAAGTTGTCTGGGTATAC
TGATGTTGTGTTTTATTGTCTGCCGCTATTCCTGATCCTGTGTCTTACTT
TTTTATCATTATGCTTTTTCATATTGGATTTTCTTCCTTCCTCGTTCCTC
GCCATTCTTTGTCTTTTCTCTTTCCCCCCCCCTCTTATTTACCCCTACTA
TTTTTCCTTCCCCCATTTTTTTTTCTCTCCTCCTCTCTCTACCTTGTTTT
CCTTTCCACCACTTTTTTGTTCCN
ACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGAGTCTAAGTTCTTGAGTTCTCTGT
ATATATTGTATATTAGCCTTCTTTCAGATGGAGGTTTGATAAAGATTTTT
TCCCAATTCGTTGTGTGTCATTTTGTCCTATTGAGAGCATCCTTTGTCTT
ACAGAAGGTCTGCGATTTTATGAGGTCTCTTACTTATCCAGTCTGTTATT
CAATGGCGAAGTCATGTGTATTTTTATTCATCGAGGCCCACTAAGTTCAC
CCTAATATGTGATCGCGCGTCCCCTACCCATTCTACCATGCTCTTTTCTG
ATTTATTATCTCTCCTTTAGTGTGACCCCCAGTTGCTTTTCCTCATATCT
CTTTCCCCTATTTTTGTTTTGTCTTCTGTCTATTGCCTCTCTTTTTCTAA
TCTTCCTTCTTTAGATGCTTAGTTTTATCTTTTATCATGCCCTCCTTTAA
TATTCTTGTCCTCATATGTTCTTCCCGCTTTTGCCCTCTCGCGTCATTTT
GTTTATCTCTGCTCCCCTTTCCCTCCTTTATTTCTCTCCTTTATGAGTTA
GGTTCTATTGTCGTTCATTTTCTCCCCCTCTTCCCCCCTTCCTATGTTCT
ATTTTGTTTTCTCTATCTCTCCAATGACTTTACTCTATTATGCTCTATAT
ATTTATATTGTCTCCCACCCACCTTATGCTCATTGTCCTCACATATTGTC
GTTCCTCTTTTTCTCCCATCCATCTATCTCTTATACCTTATTCCCGATCT
TGCTCCTTTTCAGTTCTCTCCCTATTTTACACGCCCCCTTCTTCCTTCTC
CCACTTATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_o01.b1 MSMg01no466_o01.b1 CHROMAT_FILE:
MSMg01no466_o01.b1 PHD_FILE: MSMg01no466_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:33 2005
         (446 letters)



>mm_chr1_67306842_67307687
          Length = 846

 Score =  855 bits (442), Expect = 0.0
 Identities = 445/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccccatctcttagatataattccaagaaacatctccaaggaacctccatccctgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cttccccatctcttagatataattccaagaaacatctccaaggaacctccatccctgctc 587

                                                                       
Query: 61  caaatattatcaacctagcaaacactgtagctgagcgatttgcctcatcttgccagatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 caaatattatcaacctagcaaacactgtagctgagcgatttgcctcatcttgccagatag 527

                                                                       
Query: 121 agactaggatctgaatccaaaccagggatgtggtgcattatagaatcataatttcttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agactaggatctgaatccaaaccagggatgtggtgcattatagaatcataatttcttaga 467

                                                                       
Query: 181 aacattgctggatgcttgccaaacaagtgcaagagcccaacctggagcatcttagattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aacattgctggatgcttgccaaacaagtgcaagagcccaacctggagcatcttagattac 407

                                                                       
Query: 241 ctcctggggcatatgttgttaatacttttcaccttgctgataagatggttaagtacctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctcctggggcatatgttgttaatacttttcaccttgctgataagatggttaagtacctca 347

                                                                       
Query: 301 agtcctttatttgttaaaaaccttagaatggatcagtttcaaattcttaatctcaaagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agtcctttatttgttaaaaaccttagaatggatcagtttcaaattcttaatctcaaagac 287

                                                                       
Query: 361 ttttcatcaagaagacccaaggaagacttgtaatttctgctggattccttgacaggtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttttcatcaagaagacccaaggaagacttgtaatttctgctggattccttgacaggtgag 227

                                     
Query: 421 aaaagccattgcccttcgcttcctac 446
           ||||||||||| ||||||||||||||
Sbjct: 226 aaaagccattgtccttcgcttcctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)