BAC Information

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BAC

Clone NameMSMg01-466P20
Chromosome1 (Build37)
Map Location 19,894,512 - 19,894,788
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466P20.T7 (MSMg01no466_p20.b1)MSMg01-466P20.TJ (MSMg01no466_p20.g1)
ACCAG550807AG550808
length852801
length of high quality
(start - end)
242 (77 - 318)277 (86 - 362)
definitionCHROMAT_FILE: MSMg01no466_p20.b1 PHD_FILE: MSMg01no466_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:42 2005CHROMAT_FILE: MSMg01no466_p20.g1 PHD_FILE: MSMg01no466_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTCCAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAACTGTGTCCTGCCAAATGACTGAGACGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCTTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCACTGCT
GGTAGGATTGCAAGCTTGTACAACCACTCTGGAAGTCAGTCTGTATTTTG
TTTTCTCTGTTTTCTTGGTCTTATTTTCTTCATCTCCCAGGCTAGAAATA
TCCAAGTTCTGTTTCTTTTCTAGTTCAGTTCTATCTCATATTTCCCTCTT
TCTTGCTTTGTTGATTTTTATATATTCACCCCTTATCTTTTTTGATCTCT
TGAATGTACCCTATCTCTACTCTTCGATTCAACCCTACCTCTCTTTAACT
CTCCCCACCCTACTTGCCTTTTATATTTTTTGTTTTTTTCCTTTCTCTCT
CCCTCTTTTTACACCATTTATATTTGTTTATAGCCATTTTATTGTCCATC
TTTTTTCCTTTTCACCCCATTTATATCGCGAATACATATTTTCAATTTAA
TTATTCACCCCCCCTCCTGCTTTTTTTTCTCTATTCCCGTTTAACGCTAT
CCATTTTCACCTTTATCCCTCTTTATTCCTCCTGCTTCTTCTCCTTTTTT
TTTTTCTTTATCTCACTTCTTATTTTTTTTTTTCCCCCATTCTTCTCCCC
ATTATCACGCACCCCCCTATATACGTACCATATTTCTTTTGTATTCCCTC
TG
NTTTCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTACTAAAGGCTA
TTTACTTGATTTTGGTGTTGTTGGGAATTTCAATTGTTCTAAAGCAATGT
TTTGAAAATAATATACTAAATCAAATAAATTTTAAGAATGCTTAGTTAGT
ACAAAATCTAGTCAGTTTCATTAAAGTTATTGACAAATAGTTTCCATTAA
AATACAGGTTTAAAATATGATCATCTATCTCAACATAACTTGAGCCATAA
TTGCTTTATGGTTTCCACCCCCCATCCCCCAGGAAGAATCTACTCTTCCT
GAATATAATGCTATGATATGTCTATTATATCCAGTGTCACCAATCTCCTC
TTTTAAACTCTAAGGATACACAGATGACAGCTGACCTTATAGGATCATTT
CTCTTTAAATAACACTTGGTATAACTAACTTATCTTCGATGGTTTACTTG
CTCCACCTGTTGATCTTATAATATTCTTTTTCTTTTTTTCATTATTTTTT
TTCCCCTTTATTTATTCCTCTTCTTTTCTCCCATTTCTTTTTCTTTATTT
CATCCCTATTAACATCCCTTTTTTTTTTTTCTTTTTCTTTTCATCTTTAC
ATAATATCACTATATTTAATCCATTATTTTTCTATATTCTCCCTTTCATC
CTATTAATCCTTCTTCCCTTCTCTCCCCTTTATTCATAATCCTTCTCCCT
CCCTTATCTTATTTATACTATTCTACATTCCAAACTTCTCCTTTCCTATT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_p20.g1 MSMg01no466_p20.g1 CHROMAT_FILE:
MSMg01no466_p20.g1 PHD_FILE: MSMg01no466_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:42 2005
         (277 letters)



>mm_chr1_19894312_19894988
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtactaaaggctatttacttgattttggtgttgttgggaatttcaattgttctaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtactaaaggctatttacttgattttggtgttgttgggaatttcaattgttctaaagc 260

                                                                       
Query: 61  aatgttttgaaaataatatactaaatcaaataaattttaagaatgcttagttagtacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgttttgaaaataatatactaaatcaaataaattttaagaatgcttagttagtacaaa 320

                                                                       
Query: 121 atctagtcagtttcattaaagttattgacaaatagtttccattaaaatacaggtttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctagtcagtttcattaaagttattgacaaatagtttccattaaaatacaggtttaaaa 380

                                                                       
Query: 181 tatgatcatctatctcaacataacttgagccataattgctttatggtttccaccccccat 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 381 tatgatcatctatctcaacataacttgagccatgattgctttatggtttccaccccccac 440

                                                
Query: 241 cccccaggaagaatctactcttcctgaatataatgct 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccccaggaagaatctactcttcctgaatataatgct 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)