Query= MSMg01no467_c11.b1 MSMg01no467_c11.b1 CHROMAT_FILE:
MSMg01no467_c11.b1 PHD_FILE: MSMg01no467_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:56 2005
(238 letters)
>mm_chr1_57922230_57922868
Length = 639
Score = 445 bits (230), Expect = e-129
Identities = 236/238 (99%), Gaps = 1/238 (0%)
Strand = Plus / Plus
Query: 1 atatttttctaaaccctaatactgtttaggtgtgaccagctggacagaaataacttctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatttttctaaaccctaatactgtttaggtgtgaccagctggacagaaataacttctgg 260
Query: 61 tggactgaggggctcagctactttcaaat-atctgcaagtctaattggtaattctggggg 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tggactgaggggctcagctactttcaaattatctgcaagtctaattggtaattctggggg 320
Query: 120 tattagaggaagagaccaacatagtaattaaaaatcaaacagctcaaagcatgacaatta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattagaggaagagaccaacatagtaattaaaaatcaaacagctcaaagcatgacaatta 380
Query: 180 ggtgttcacgccattgcatgatgtgtgctgcccataaaccttgttataacatgggcac 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgttcacgccattgcgtgatgtgtgctgcccataaaccttgttataacatgggcac 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 639
Length adjustment: 9
Effective length of query: 229
Effective length of database: 630
Effective search space: 144270
Effective search space used: 144270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no467_c11.g1 MSMg01no467_c11.g1 CHROMAT_FILE:
MSMg01no467_c11.g1 PHD_FILE: MSMg01no467_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:56 2005
(421 letters)
>mm_chr1_58114599_58115418
Length = 820
Score = 770 bits (398), Expect = 0.0
Identities = 413/418 (98%), Gaps = 1/418 (0%)
Strand = Plus / Minus
Query: 1 ttcctggactccctccagatcttcaccacactgtctgtagagaagccgtgaattgtgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttcctggactccctccagatcttcaccacactgtctgtagagaagccgtgaattgtgact 558
Query: 61 agaaacgactctcgcctgttgctctgtcggactaaacagctaacttgatgagcgcatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agaaacgactctcgcctgttgctctgtcggactaaacagctaacttgatgagcgcatttc 498
Query: 121 cataggaaaagaaatctaagaactcaccatccctggcctggcttatgacacccagctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cataggaaaagaaatctaagaactcaccatccctggcctggcttatgacacccagctctt 438
Query: 181 caattctgtcaggagaaattatgatggggtggaagacacctttaaactttacttcaggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caattctgtcaggagaaattatgatggggtggaagacacctttaaactttacttcaggtc 378
Query: 241 ctattgtattgtggtagagacacaagattagaacaaaaagacacaaatgactctctactt 300
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctaagggattgtggtagagacacaagattagaacaaaaagacacaaatgactctctactt 318
Query: 301 tgaattatgactaaacgaatgtctttgcacataaggaagttgtttccttttattggtctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgaattatgactaaacgaatgtctttgcacataaggaagttgtttccttttattggtctg 258
Query: 361 tttattgcataccacaagcagagatatttagggagcctttggaatttgttagctctaa 418
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 257 tttattgcaaaccacaagcagagatatttagggagcctttggaa-ttgttagctctaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 820
Length adjustment: 9
Effective length of query: 412
Effective length of database: 811
Effective search space: 334132
Effective search space used: 334132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
