BAC Information

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BAC

Clone NameMSMg01-467L08
Chromosome1 (Build37)
Map Location 134,092,478 - 134,092,645
singlet/doubletsinglet
Overlap genenone
Upstream geneRassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221
Downstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467L08.T7 (MSMg01no467_l08.b1)MSMg01-467L08.TJ (MSMg01no467_l08.g1)
ACCAG551352AG551353
length757731
length of high quality
(start - end)
101 (163 - 263)172 (326 - 497)
definitionCHROMAT_FILE: MSMg01no467_l08.b1 PHD_FILE: MSMg01no467_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:39 2005CHROMAT_FILE: MSMg01no467_l08.g1 PHD_FILE: MSMg01no467_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAATTGCGGCGCTAAACGACTCACATATTTCGTACCCGTCGGATTCTN
TAGTGTTACANAGACTGGAGNGAGAAGGGGGGGGGAGGAGCTTAGGGGAA
CTCCGCACTTTAGATCCTGTTCAGAATACAGCCTGTGGCTGAGGCCTGGG
ATAATGGCTGAGCGTAGTGTGCAGCTCTTCCTGAAGGCATTGCCCACCCT
CCACCACTCCAATCCCACCGCTCCGTGCAGGAACAGAGCCTTTTCTGAGA
GGAAAAGCCGGAGGATGCTGGCCAGTGAAAGTTCCCAGAGGTGCTCTGTC
CTCTGGTATTTTTTTTTGCATCATCATCACTCCTTACTGAAGATACGATA
GTTCCTCCTTCTTGTTGTTCCTGTGTTGTTGCAATCGCTCTTGACTCAAC
GCTTATATCCCGCCCCCTCCGTTCATAGCTTATTCTGTTCTCTCTTCCCA
CTGAGTGATGCATCCTCTTCTTTTCTTCACCTCGTCGTGTAATTCCCCTG
AACTCCTTTATTCCTTCCCTGCCCCCTCTCTTTTACTCTGTCATCATCTC
CCCGCACTTTTTTTTCCCCTTCCTCCCCCTTATCCCACCTCTTGCCCTTC
CCCCTTCTTTTTTTTTCCCTATTCCTTTTTTTTCACTCCCATCTTTCCCC
CATTTAACCCCCTTTACAATCTCATCCCCTCCCTCCTCCCCACACAAACT
ACTCTTTCCTTTTTACCCCCCCTCTTTACCTTCTCTATACTCCTCCTAAC
ACTCTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAGAATTTGGGAGAGACGGGAGCCAGA
CCTGAGGATGTGTTGAGGCCGGGACAAGGAGTCTATACAGTGGCCTGTGT
GTACACAGAATGCATCTTGGGCCACCTGGGCTCAGGCTCCATTCCTAGCA
GAGCTGACAGCTTAGGGGTGAACTCAGAGGGAAGAAACAGTGGAAATGGC
ACCTGTGAGAAAGGTTGAGGCCTTGCGTTCTCGCTGAACTGTGTCCTTGT
ACTGCCTTAGGGACATTTTTTTCATCCCCAGGAGGCAGGGTTTTCCTGGC
TAAAGGAGGTGGGGCCCATTTGACCTGCCTTCCCTCCCTCAGCCAGGCCT
GAACCAGATGCCTTGCCATCTCTACCCCACAAGATTTTTGGTTCCAGAAA
CAGCTTCAGGGACCCCCCCCCCCATCCCATTCCAGGGCTTTCTTGGGGCT
TGTCAGGTGTGTGCTAGGTCTGGCAGTCAGGTCATATTCCAGAAATTAGA
AGCCACACTTAAGTTGCCTGACTAAGGTCCATGACTGACCAGCGCTGACC
TGTGGTTCTGGGACCGGTCATTGACGTACCCGTGTGCCTGTTTTTTTGTC
TTCCCTTTTTCACCCCTTCCTCGCTCCCCCCTCTTATCTCTATTCTTCCT
TCGCTTACCCTTTAACTTTTACTTTCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_l08.g1 MSMg01no467_l08.g1 CHROMAT_FILE:
MSMg01no467_l08.g1 PHD_FILE: MSMg01no467_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:39 2005
         (172 letters)



>mm_chr1_134092278_134092850
          Length = 573

 Score =  267 bits (138), Expect = 3e-76
 Identities = 162/172 (94%), Gaps = 4/172 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccaggaggcagggttttcctggctaaaggaggtggggcccatttgacctgccttccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccaggaggcagggttttcctggctaaaggaggtggggcccatttgacctgccttccct 260

                                                                       
Query: 61  ccctcagccaggcctgaaccagatgccttgccatctctaccccacaagatttttggttcc 120
           |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct: 261 ccctcagccaggcccgaaccagatgcattgccatctccaccccacaagatttttggtccc 320

                                                               
Query: 121 agaaacagcttcagggacccccccccccatcccattccagggctttcttggg 172
           |||||||||||||||||||||||| |||    |||||| |||||||||||||
Sbjct: 321 agaaacagcttcagggacccccccaccc----cattcccgggctttcttggg 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 573
Length adjustment: 8
Effective length of query: 164
Effective length of database: 565
Effective search space:    92660
Effective search space used:    92660
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)