Query= MSMg01no467_m22.b1 MSMg01no467_m22.b1 CHROMAT_FILE:
MSMg01no467_m22.b1 PHD_FILE: MSMg01no467_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:47 2005
(534 letters)
>mm_chr1_189084914_189085847
Length = 934
Score = 973 bits (503), Expect = 0.0
Identities = 524/531 (98%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaatccgttcc-gctgcgatcctgtcatgagcaggtcagcagtcgtgtcaagg 63
||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatccgt-cctggtgcgatcctgtcatgagcaggtcagcagtcgtgtcaagg 263
Query: 64 tcctattggaaagctcagagccaacatcttaattcagacttagctatcccgctcacttgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcctattggaaagctcagagccaacatcttaattcagacttagctatcccgctcacttgt 323
Query: 124 atgtgcaattgtaagcaattttttcaagtcacaactctctattagaacgggattcattta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtgcaattgtaagcaattttttcaagtcacaactctctattagaacgggattcattta 383
Query: 184 gttcaaaggggatagttgtgcatgtgaattacgtggctggctaccctggcgtaaatggag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttcaaaggggatagttgtgcatgtgaattacgtggctggctaccctggcgtaaatggag 443
Query: 244 tacatagaaatctgggcatctcatttgtgtggtgttgtggtatgcatgcttctgttacca 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 tacatagaaatctgggcatctcatttgtgtggtggtgtggtatgcatgcttctgttacca 503
Query: 304 ggttagagagattgaacaaaacttggaagtcctttaccattgtcttcgtgcacccagact 363
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 ggttagagagattgaacaaaacttggaagtcctttaccattgtcttcttgcacccagact 563
Query: 364 tcatgttgcataatttgcagtggtaaaacatgatttaatggtatgaagttctaggaccgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 tcatgttgcataatttgcagtggtaaaacatgatttaatggtatgaagttctaggacggt 623
Query: 424 gtcctctgactttaagctggagcctcaccattggagtattacccccagtttgtcattagt 483
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 624 gtcctctgactttaagctggagcctcaccattggagtattacccacagtttgtcattagt 683
Query: 484 gctccagttctcattctgtgatatacgtctgcataataaaaactgagttca 534
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gctccagttctcattctgtgatatacgtctgcataataaaaactgagttca 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_m22.g1 MSMg01no467_m22.g1 CHROMAT_FILE:
MSMg01no467_m22.g1 PHD_FILE: MSMg01no467_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:47 2005
(515 letters)
>mm_chr1_189237719_189238633
Length = 915
Score = 903 bits (467), Expect = 0.0
Identities = 503/515 (97%)
Strand = Plus / Minus
Query: 1 cttcccattgatttattaagcctatacatcttgtggtgggcagcttctgtctataaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cttcccattgatttattaagcctatacatcttgtggtgggcagcttctgtctataaaagg 656
Query: 61 tgtctgagaaccgtttcacagtcctgtgttttacagccccctgacattcatggactgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgtctgagaaccgtttcacagtcctgtgttttacagccccctgacattcatggactgact 596
Query: 121 ctgacttgcccagggttggtatcgacgctaagagatgttacaagtcaggcttcagtcttg 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 595 ctgacttgcccagggttggtatcgacgctaagaggtgttacaagtcaggcttcagtcttg 536
Query: 181 atgcattgttggttcggcagagtacagtgtttgcgtggtaataaaatataataaccaaac 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 535 atgcattgttggttcggcagagtacagtgtttgggtggtaataaaatataataaccaaac 476
Query: 241 tcgtagcataaaacactttggctacacaggtttcacatcatctgagatcgaaggaggaca 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tcgtagcagaaaacactttggctacacaggtttcacatcatctgagatcgaaggaggaca 416
Query: 301 gggtagaaactgactcttgctttccccaaatactcccggggaagaagtgagaaactgcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 415 gggtagaaactgactcttgctttccccaaatactcccggggaagaagtgagaagctgcct 356
Query: 361 ttgttaagacagacagaagttcacagtaggcactgaaatctgagagaggctaacagagtg 420
|||| || |||| ||| |||||| ||||||| ||||||| |||||||||| |||||||||
Sbjct: 355 ttgtgaacacagtcaggagttcatagtaggccctgaaatatgagagaggccaacagagtg 296
Query: 421 gccaagtttgcagacgtggcagacacatccaggaaatcttgccagcaggcaggaccgtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gccaagtttgcagacgtggcagacacatccaggaaatcttgccagcaggcaggaccgtgt 236
Query: 481 tgctctttgactcagggacagggtgtctaggaggt 515
|||||||||||||||||||||||||||||||||||
Sbjct: 235 tgctctttgactcagggacagggtgtctaggaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
