Query= MSMg01no467_o12.b1 MSMg01no467_o12.b1 CHROMAT_FILE:
MSMg01no467_o12.b1 PHD_FILE: MSMg01no467_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:54 2005
(239 letters)
>mm_chr1_73223759_73224399
Length = 641
Score = 429 bits (222), Expect = e-125
Identities = 233/238 (97%), Gaps = 4/238 (1%)
Strand = Plus / Plus
Query: 1 agaatgtacagccaaacaggcaattgaattagagaaggccaccatatttttttttcctga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agaatgtacagccaaacaggcaattgaattagagaaggccaccatatttttttt-cctga 259
Query: 61 atgctactgaagatattggatggaagcaattcacaccaaaacatttttgattacttagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgctactgaagatattggatggaagcaattcacaccaaaacatttttgattacttagag 319
Query: 121 actaagtttacactgtgaccaatgagtcctgggttaggataaatgggtggccttgtcagt 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actaggtttacactgtgaccaatgagtcctgggttaggataaatgggtggccttgtcagt 379
Query: 181 tttttttttttt---ggaggggatggtgtgatacatattttaactttatgtaactttt 235
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttttttttttttttggaggggatggtgtgatacatattttaactttatgtaactttt 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 641
Length adjustment: 9
Effective length of query: 230
Effective length of database: 632
Effective search space: 145360
Effective search space used: 145360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no467_o12.g1 MSMg01no467_o12.g1 CHROMAT_FILE:
MSMg01no467_o12.g1 PHD_FILE: MSMg01no467_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:55 2005
(591 letters)
>mm_chr1_73363044_73364033
Length = 990
Score = 1127 bits (583), Expect = 0.0
Identities = 589/591 (99%), Gaps = 1/591 (0%)
Strand = Plus / Minus
Query: 1 ctgatatcaggaatgaagagaaggtgtcacaggaaagaaatggacaagcagaaatttaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctgatatcaggaatgaagagaaggtgtcacaggaaagaaatggacaagcagaaatttaca 731
Query: 61 gaaaaaagtcaggcaaatacacttaaattaaaaatctagaaagactcattcaaaaattac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaaaaaagtcaggcaaatacacttaaattaaaaatctagaaagactcattcaaaaattac 671
Query: 121 aaaactggattatgttatggggattgacaaaaagtgaattagaaagatctaattgtccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaaactggattatgttatggggattgacaaaaagtgaattagaaagatctaattgtccct 611
Query: 181 cccactatctattaaaatgctaattcatcatcagactccctccccaaaagacaacgttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cccactatctattaaaatgctaattcatcatcagactccctccccaaaagacaacgttgg 551
Query: 241 ggttgaattattttactagtgaagactataaaatattctccaaatcctgtaagacacaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggttgaattattttactagtgaagactataaaatattctccaaatcctgtaagacacaac 491
Query: 301 accaaaggagatttagagatagcccaagaaaatgcatttaatgtaagtagtcttcaagaa 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 490 accaaaggagatttagagatagccgaagaaaatgcatttaatgtaagtagtcttcaagaa 431
Query: 361 aaggcagatcaaaatctcctgatctatacactacttcatgcacaaagacccgtgctacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaggcagatcaaaatctcctgatctatacactacttcatgcacaaagacccgtgctacca 371
Query: 421 aacaaatgtccaccaggatgcagaagactatgtgctgtcaatcaaatatcccaggatgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aacaaatgtccaccaggatgcagaagactatgtgctgtcaatcaaatatcccaggatgca 311
Query: 481 gaggagtgaggattttcatgcagggctgatacactgctcatctggaaaatggtctggctc 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaggagtgaggattttcatgca-ggctgatacactgctcatctggaaaatggtctggctc 252
Query: 541 tataaagtccaacacaaattcactgtgtcagtcttgggtttccatccaaga 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tataaagtccaacacaaattcactgtgtcagtcttgggtttccatccaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 990
Length adjustment: 10
Effective length of query: 581
Effective length of database: 980
Effective search space: 569380
Effective search space used: 569380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
