BAC Information

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BAC

Clone NameMSMg01-468C10
Chromosome1 (Build37)
Map Location 80,209,366 - 80,209,879
singlet/doubletsinglet
Overlap geneA830043J08Rik
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325
Downstream gene2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468C10.T7 (MSMg01no468_c10.b1)MSMg01-468C10.TJ (MSMg01no468_c10.g1)
ACCAG551690AG551691
length1,922781
length of high quality
(start - end)
---514 (74 - 587)
definitionCHROMAT_FILE: MSMg01no468_c10.b1 PHD_FILE: MSMg01no468_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:15 2005CHROMAT_FILE: MSMg01no468_c10.g1 PHD_FILE: MSMg01no468_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCGCGTGTCTCTCTCTATGNGNNNNGCNNNGNNNTNGNCGNNANNGTGA
AGTGGGACGAAGCAGCGTGTCTTCCTCGCTATACGAGATAGTAGAGAGNT
GGAATAGTANTGTGTATATGTAGTGATGCTGATTANCATAGCGCTAATAT
AAACCACAGCGAAGACAGTGNACANACACGAGGATAAGATAGAAGATAGA
GCAATGTACAGTGTGATGGTAATGCGTAGATGAGAAGTAAGTAATGTAAG
ACGTCCACCTACGCTGCGTAATACAGCCTCGCNCATCATATTGAGGGTCA
CTAGGTATACAGACCTGCGCAGTGATGAGGAGATCGACTCCATGATAATA
GTATGATACATCGATGAGATATAGTATACAGGGTATACGAGGCTCTATTA
TACTCATGTGAATGTTATAGATGCTGAGTATGTGTGATGTNACAGCCAAC
ATAAGACACGAAAAGACTGAGAGAANACTACACCACGGAGATATAACACA
AGTGCACATCGATACGAGGCTACAGACATCAGAGAGATACATAATGACAC
GACGCGAGGTGACGGTGCTGCGTCATGTAGACGCGCGAGAAATGTTGGGA
ATTGTATGTGCAATGGTGCTCTTTGGCGTGCGTGTGGATGTGGGAGCGAT
GTGGGTGGTAATTGGGCTGTGGAATGAGATATATGGATTGTTGGATATNG
TGTGTGTCTGTCTCGTCGTCGTGTGAGTNGTGTTGTGTTGTGTGTTNATA
GTATTGTGTGTGTGTGTGTGATGCGACGTCTCACGCCAATNCAACGCTGG
ATGATGAGAGTCTGGCACCTGCTCATATGTGCGTCCGTGTGCCTTCTGTG
CTCCTCACATACTCACCATATATTATGTACGTCTCACGAGTCTNGAGAGC
CAGTGCACCNCAGANCGGCGAGCTGTGAGTGCTCATCGCGTGACGTCTGT
GATGTCGTGTCTCGCGCGCGATAGATATATAGATTGATTTAGAGCTGCAG
AGCAAGATATGTCGTCGGTGCATGTTACTCTATAGCTGCTGGAATATACA
TCGTGAGGTGTATGATGAGAGTTATNCATACTCGTACTAACACATCACAC
TGATCGTACTACTTAGTATGCTACGTAGAGATGGGNGATCTGTGANGATG
TGTAGAGATATGATGTATGTTGTTGAAGTATGGGTGAGCTCTNCTCCTCT
TCGCGTCAGCGCTGAGTTATACATCTAGTCNNGTCATCATANCACGATGA
CTGATAGTTATGGAATTATTATACGCCGTCTGCTGTTGTTGCGTGAATGG
GTGTGACTCTCTTAACACTGTGCTCACGTGTGCGTCATACTCCTGNTGCG
TATNTGTCACTCCGCACTGCGCGCTCTACATATGCGAACGCTCGACAATC
GTCTATATCTATNCNTNGAACTCGANGATAATTTATTGAGTCGAGTGGAG
TGNTTATGTCGGCGTAGAGCAGATGTGTCTATATGAGCATGAGGCCATGT
CATATAGTACACTAGTAGNGTTGTGAGCNGTATCTAGACTAACGAGTGTG
GCTACACATGATGCTTGTATACACGTATCTGTCNAGCAGATCTACTNACC
GATACTAACGAAGATGNCATACTAGACAGCAGCAGCGTATGAACGCGTGA
CGTGCGAGCGGTCCGGCTGCTAGTGTGCTGTGTGCTGACTGCGTATGTGT
GATGTCTCTCTCNCATCGTCGCAGGAGTGAGTANGATCACTCGTCTACNA
CCTTGCTAGCGTCGCGTCTGGTATCNCGTGGGCGTGTGTGATTATGTGCA
TCACGAGACGGCTCGTACTGATNTGGTCGTAACTGNGTGACGCTATGCGT
CGTATTTATGTCGTNTNGTGATCTACTATCCCCATCTACTACACTGCGTA
TTCATCGCTACTATTATAGACN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTCTGTCTTCCTCTACTATTCGTC
ATTTTAATTGGCCTGCTGTAGATGGACGGCCAAGTCTAGCTTGTTTGAGC
TCCCAGGATCCTGGATCTGACCCTACTAAACCTGGTACACCCCAGAAATG
AACGAAATGAAATACCTGCAGCAGAATCTTATTGCCATCATAGTCCTGAG
TCTGCCACCTCGCGCTGCTGATGGGAACACACGGATTAGGTAGAAGAGGC
ACCAGCTGCCCGATCTCTTGAATTCTGTTCTGCAGCACAGAAGACCCCTT
GGGGTCTACTGACATTCCCAGGGGCAGCTGCTTCAGAGAGAGCTGCAGGC
TGAAGCCCTCGGTGGCATAGAGGACAAAGAAACAGAAGTCGCTCTTTTGC
ACAGTGGCGTCTCTCTGTAGAAGCATCTCATAGAGTCTGATGGCATCTTC
ATAGTTATCAAAACTGCAGTACAGAGTCACCCTGAGGATATCAGTGCCAC
AATTCACTGGCCTCATGCCCCACACTGGCATCTGGTTGTGCAGACTGTAN
AATTCCTGATTGGTAGGGAGATATGATCAAGACCTCCCCTGTGCATGCTG
GGTTAGGAAACCCTGCTCTTTTTTACGCCCGCAGTAAAGCCAATAATCTA
AACCATCGTTCTTGTTCCCTAGTTTTCCTGAATGTTATTCATCTCAGCAT
TTTCCTGGCAATCCGTACCCCTCCTCCGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_c10.g1 MSMg01no468_c10.g1 CHROMAT_FILE:
MSMg01no468_c10.g1 PHD_FILE: MSMg01no468_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:15 2005
         (514 letters)



>mm_chr1_80209166_80210079
          Length = 914

 Score =  940 bits (486), Expect = 0.0
 Identities = 507/514 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctctgtcttcctctactattcgtcattttaattggcctgctgtagatggacggccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctctgtcttcctctactattcgtcattttaattggcctgctgtagatggacggccaa 260

                                                                       
Query: 61  gtctagcttgtttgagctcccaggatcctggatctgaccctactaaacctggtacacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctagcttgtttgagctcccaggatcctggatctgaccctactaaacctggtacacccc 320

                                                                       
Query: 121 agaaatgaacgaaatgaaatacctgcagcagaatcttattgccatcatagtcctgagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaatgaacgaaatgaaatacctgcagcagaatcttattgccatcatagtcctgagtct 380

                                                                       
Query: 181 gccacctcgcgctgctgatgggaacacacggattaggtagaagaggcaccagctgcccga 240
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 381 gccacctcgcgctgctgatgggaacacacggattgggtagaagaggcaccagctgcccaa 440

                                                                       
Query: 241 tctcttgaattctgttctgcagcacagaagaccccttggggtctactgacattcccaggg 300
           |||||||||  |||  |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tctcttgaaccctgaactgcagcacagaagactccttggggtctactgacattcccaggg 500

                                                                       
Query: 301 gcagctgcttcagagagagctgcaggctgaagccctcggtggcatagaggacaaagaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagctgcttcagagagagctgcaggctgaagccctcggtggcatagaggacaaagaaac 560

                                                                       
Query: 361 agaagtcgctcttttgcacagtggcgtctctctgtagaagcatctcatagagtctgatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagtcgctcttttgcacagtggcgtctctctgtagaagcatctcatagagtctgatgg 620

                                                                       
Query: 421 catcttcatagttatcaaaactgcagtacagagtcaccctgaggatatcagtgccacaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcttcatagttatcaaaactgcagtacagagtcaccctgaggatatcagtgccacaat 680

                                             
Query: 481 tcactggcctcatgccccacactggcatctggtt 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 tcactggcctcatgccccacactggcatctggtt 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)