Query= MSMg01no468_h13.b1 MSMg01no468_h13.b1 CHROMAT_FILE:
MSMg01no468_h13.b1 PHD_FILE: MSMg01no468_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:42 2005
(517 letters)
>mm_chr1_73393850_73394766
Length = 917
Score = 797 bits (412), Expect = 0.0
Identities = 421/424 (99%), Gaps = 1/424 (0%)
Strand = Plus / Minus
Query: 1 ggctaaagatttctgtccaccaaatcaacacaacatgcttcaaaatcaaactataggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggctaaagatttctgtccaccaaatcaacacaacatgcttcaaaatcaaactataggagc 364
Query: 61 tataggatataagtataaaagcacttacatatcaaaaagtgacttttgtgcaaatcaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tataggatataagtataaaagcacttacatatcaaaaagtgacttttgtgcaaatcaagt 304
Query: 121 aggcaaatcaagtgtgctggttagggttcaccagagggatgagggtgttgaggatataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggcaaatcaagtgtgctggttagggttcaccagagggatgagggtgttgaggatataaa 244
Query: 181 taatggtaaggggacattaattggggtgactcagatgttaaatcatctgcaatctggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 taatggtaaggggacattaattggggtgactcagatgttaaatcatctgcaatctggaga 184
Query: 241 gccaaggatgccctgttatgtaatctgtccaagaatctggatgccttaaaaccagaagac 300
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gccaaggatgccctg-gaggtaatctgtccaagaatctggatgccttaaaaccagaagac 125
Query: 301 agagatgtggctggagtctgaagcagaaggcgtgagagctcctgtaagtcattggcatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agagatgtggctggagtctgaagcagaaggcgtgagagctcctgtaagtcattggcatgg 65
Query: 361 gtatttagagactgaagaatctagaggcaaggacagcagcaaaacaaatgtctggcttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gtatttagagactgaagaatctagaggcaaggacagcagcaaaacaaatgtctggcttaa 5
Query: 421 gaaa 424
||||
Sbjct: 4 gaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no468_h13.g1 MSMg01no468_h13.g1 CHROMAT_FILE:
MSMg01no468_h13.g1 PHD_FILE: MSMg01no468_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:42 2005
(514 letters)
>mm_chr1_73281843_73282756
Length = 914
Score = 911 bits (471), Expect = 0.0
Identities = 501/511 (98%), Gaps = 2/511 (0%)
Strand = Plus / Plus
Query: 3 acaggaatggatgccaccagctccttagagtcacaaaaccacatctgcctgttgcctagc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 acaggaatggatgccaccagctccttagagtcacaaaaccacatctgcctgttgcctagc 262
Query: 63 catgggccaccagcacggcattccttcctgcctgcaaatgtcccacagattactggtggc 122
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 263 catgggccaccagcacggcattccttcctgcctgcaaatgtcccacagattcctggcggc 322
Query: 123 tctaaagaagaaaagaaaatagagcgagtgcagacagcaaaggaaaggaagaagacccct 182
|| ||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||
Sbjct: 323 tccaaagaagaaaagaaaatcgagggagtccagacagcaagggaaaggaagaagacccct 382
Query: 183 gtctagactttgttagcagatctctatgctgccttctctgaacacccagaaatatatgtg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtctagactttgttagcagatctctatgctgccttctctgaacacccagaaatatatgtg 442
Query: 243 gctcgttccttactgctcccttccaacctcaccttcctgctctttacaattctctgtgat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctcgttccttactgctcccttccaacctcaccttcctgctctttacaattctctgtgat 502
Query: 303 tgctgaagcccgtgggttcagacatgtaggcacgggggacaaagttcttcatgctctggt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgctgaagcccgtgggttcagacatgtaggcacgggggacaaagttcttcatgctctggt 562
Query: 363 g-cctttgaatctctttttagccaaggataaccttgaacttttgatcctcccatctctgc 421
| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 563 gtcctt-gaatctctttttagccaaggatgaccttgaacttttgatcctcccatctctgc 621
Query: 422 ctcctgagtgcttgacttagagacctgtggcagcaactcattgttttatgcagttctgga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctcctgagtgcttgacttagagacctgtggcagcaactcattgttttatgcagttctgga 681
Query: 482 gatcagagccacagctttgtgcatgctatgg 512
|||||||||||||||||||||||||||||||
Sbjct: 682 gatcagagccacagctttgtgcatgctatgg 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
