Query= MSMg01no469_a07.b1 MSMg01no469_a07.b1 CHROMAT_FILE:
MSMg01no469_a07.b1 PHD_FILE: MSMg01no469_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:26 2005
(244 letters)
>mm_chr1_189666848_189667491
Length = 644
Score = 449 bits (232), Expect = e-131
Identities = 241/244 (98%)
Strand = Plus / Plus
Query: 1 tggatatggtagcatatacctgtaatggtaggactcttacaacatgatgggaggtggggt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tggatatggtagcatatacctgtaatggtaggactcttacaacaggatgggaggtggggt 260
Query: 61 caggagcatcctcagaagctcaggggcaactccacatgacagtgagcgacaagaagccct 120
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 261 caggagcatcctcagaagctcaggggcaactccacatgacagtgagcaacacgaagccct 320
Query: 121 gtgtcaaacaaggtgcagtgtgagggctaacacttgaggtcgccttctggtttccacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtcaaacaaggtgcagtgtgagggctaacacttgaggtcgccttctggtttccacact 380
Query: 181 catcctttggtataagtgtactttcagtcacacacatatgcattcatgcactcatgtgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcctttggtataagtgtactttcagtcacacacatatgcattcatgcactcatgtgca 440
Query: 241 cgtg 244
||||
Sbjct: 441 cgtg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no469_a07.g1 MSMg01no469_a07.g1 CHROMAT_FILE:
MSMg01no469_a07.g1 PHD_FILE: MSMg01no469_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:27 2005
(580 letters)
>mm_chr1_189762409_189763388
Length = 980
Score = 946 bits (489), Expect = 0.0
Identities = 547/581 (94%), Gaps = 25/581 (4%)
Strand = Plus / Minus
Query: 1 ccagctgccacaccagtagggacagttgactctggcctgaagcttgagtacgattgaact 60
||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 793 ccagctgccacaccagtagggacagttgactctggcctggagcttgagtaggactgaact 734
Query: 61 tcctggggagtctgctgagagtgggggaggggaagcaagcctcagcatctgtagcaggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tcctggggagtctgctgagagtgggggaggggaagcaagcctcagcatctgtagcaggga 674
Query: 121 caccaggtaaggcagccaggccatgaaaacaaggccaactgataaccctctgctggagca 180
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 673 caccaggtaatgcagccaggccatgaaaacaaggccaactgacaaccctctgctggagca 614
Query: 181 ggagaaggggtttcttcaaaaaataaaataatagtaaaataaataataaaaatcactgtt 240
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 613 ggagaaggagtttcttcaaaaaataaaataatagtaaaataaatattaaaaatcactgtt 554
Query: 241 tatggttttgtttatttttaacacacacatatgtaaagtttatataagttaaacattaat 300
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tatggttttgctaatttttaacacacacatatgtaaagtttatataagttaaacattaat 494
Query: 301 gtaagtggctagaagtggcatctaagcctctgtggtggcattcttcaaatgtttggtgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtaagtggctagaagtggcatctaagcctctgtggtggcattcttcaaatgtttggtgtc 434
Query: 361 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagag 420
|||| |||||||||||||||||||||||||||||||||
Sbjct: 433 agag-----------------------gagagagagagagagagagagagagagagagag 397
Query: 421 agagagaagcacacttggaaaatactataatgaagcaacatgttctatttaaaacctgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agagagaagcacacttggaaaatactataatgaagcaacatgttctatttaaaacctgtt 337
Query: 481 tgtcagctgcag-ttaagttgacaccgtgagcatagcaacaaatcataacattttgcagg 539
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtcagctgc-gcttaagttgacaccgtgagcatagcaacaaatcataacattttgcagg 278
Query: 540 ttttttctgcgtgcttgaagcagtcacggcacatgctcgcc 580
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttttttctgcgtgcttgaagcagtcacggcacatgctcgcc 237
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
