BAC Information

Click to search

BAC

Clone NameMSMg01-469E19
Chromosome1 (Build37)
Map Location 87,483,122 - 87,483,516
singlet/doubletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469E19.T7 (MSMg01no469_e19.b1)MSMg01-469E19.TJ (MSMg01no469_e19.g1)
ACCAG552568AG552569
length767807
length of high quality
(start - end)
546 (67 - 612)395 (75 - 469)
definitionCHROMAT_FILE: MSMg01no469_e19.b1 PHD_FILE: MSMg01no469_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:50 2005CHROMAT_FILE: MSMg01no469_e19.g1 PHD_FILE: MSMg01no469_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAAATCTCTCCTGACTCCCACTCACTCTGGTTAGCCCCACTGATTG
CTTCATGAAACATACAGCTGTTGCTGGGTTATGGCAGGAGCTGTCCAGAT
GTGCTATTTACTAAAGATGGTAGCCATATATGGTCCTTTTATCTCCCCAT
TTTAGTACTAACTTGGTGAGCAGGGAGAGGAGATGATAGGCAGAGCTGGG
TGGATCAATTCGAATTTATCTGTATGTCTGCCCTGCTTCATTTCACCCTG
ACAAGAGTGATTTGTGTTTGTAGCTGATAGAAAAGCCCAGATAGCGCTAG
AACAATCTGAAAACAATACAGGAGGTGGAGAGATGCAACTCCACAGAAGT
AGAGATGAAAATACCTCAAGGAAGAGAAGATAAGTTTGCTCTCCCTGCCA
TCAGTGCAGAGACTTTGATGGAGTGGGACTGGGAGGGAGCCTGCAGTGAA
CTGTCCATGGTGCTGAGACTAAGTTTGTGATCAAGCCTGCAATGGACTGA
AGGGGTTGAAGTAGATGACCCTCTTAACGTTAGAAATGAGTCTGAGGTGA
GAGACAAAGGACTTGTCCAAGTCCATTTTTGTTCCAAAGAAGAGAAAACT
TGGACTCCGGTCTTTTGCCAACACTCTGGGTCACCTTCTTGTACAATCAC
TGCTGGGTGACCCCCCGTGTGTGGCAGAGATTGTAACCACTCTTGAAAGT
TTGCATTTCAAGGTTGN
ATGACAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGAATCAGTTCTTGGGAAATTAAG
CTAGGGAACAGATAATGGTAGAGCCTAAGGATGACTTCTGGGCATGAGAA
ACCAAGAATTTGTGAAGGGAAAACAAGAACCAGACGTGAGGAGATAAAGA
CTTGAGCAGCTGGAGTATTGGATCGTTTGCCTGCTATCCCAGCACTTGAA
AGCATCCAGGACCATGGAAAGAACTGAGGTGGGAGAAAACGGACTTGGAA
GGCTTCCAGGAAGCAATGGTTTTACCAATGGATGACAGTACCAGAAAGGT
CACAGTGTTTTTATCATTATTATCATTATCATAATTATGACATTTATCAG
TATGTGGAGGTTGGGCATATGTTCCATGGTACACATGGAGAGGCCAAGAA
ACAACTTGTGAGTTGGGTCTGTTCTTCCACCATATGGGTTTCAGGGATCA
AATTCAGGTCACCAGGCTTGGTGGCAAGGACCTCGAGCTAGTGAGCCATT
TGCCAGACCAATGACCATTTTTACTTGACTGGCGACCTTCCCCAGTACAA
TATGGTAGACTGCCCTAGGCTAGGCGGTTATTTTTTAGTCCCGTGGACAT
CTATACCGCCTGGCCTCCACGGGGCCCTAAGGGTTCTATCCCGGTCCGCT
CTTCGCCCTATTATTCCCTCCCTTTTCCCCTCCTCCCCTTCCGTTTTTTC
GTTCTATCCCCCTCCCTCCTTTATTTCCTCTTGGTTGTGCTACTAGATAC
CCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_e19.g1 MSMg01no469_e19.g1 CHROMAT_FILE:
MSMg01no469_e19.g1 PHD_FILE: MSMg01no469_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:50 2005
         (395 letters)



>mm_chr1_87482922_87483716
          Length = 795

 Score =  710 bits (367), Expect = 0.0
 Identities = 388/399 (97%), Gaps = 8/399 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaatcagttcttgggaaattaagctagggaacagataatggtagagcctaaggatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaatcagttcttgggaaattaagctagggaacagataatggtagagcctaaggatga 260

                                                                       
Query: 61  cttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaaccagacgtgaggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 cttctgggcatgagaaaccaagaatttgtgaagggaaaacaagaaccagacatgaggaga 320

                                                                       
Query: 121 taaagacttgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagacttgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagca 380

                                                                       
Query: 181 tccaggaccatggaaagaactgaggtgggagaaaacggacttggaaggcttccaggaagc 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaggaccatggaaagaaccgaggtgggagaaaacggacttggaaggcttccaggaagc 440

                                                                       
Query: 241 aatggtttt----accaatggatgacagtaccagaaaggtcacagtgtttttatcattat 296
           |||||        ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 aatgg----ggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcattat 496

                                                                       
Query: 297 tatcattatcataattatgacatttatcagtatgtggaggttgggcatatgttccatggt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tatcattatcataattatgacatttatcagtatgtggaggttgggcatatgttccatggt 556

                                                  
Query: 357 acacatggagaggccaagaaacaacttgtgagttgggtc 395
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acacatggagaggccaagaaacaacttgtgagttgggtc 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)