BAC Information

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BAC

Clone NameMSMg01-469G06
Chromosome1 (Build37)
Map Location 71,290,142 - 71,290,382
singlet/doubletsinglet
Overlap geneAbca12
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900
Downstream geneLOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469G06.T7 (MSMg01no469_g06.b1)MSMg01-469G06.TJ (MSMg01no469_g06.g1)
ACCAG552638AG552639
length804835
length of high quality
(start - end)
241 (76 - 316)44 (72 - 115)
definitionCHROMAT_FILE: MSMg01no469_g06.b1 PHD_FILE: MSMg01no469_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:57 2005CHROMAT_FILE: MSMg01no469_g06.g1 PHD_FILE: MSMg01no469_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGACACTATCCGC
GGAATTCTCTCCTTTTCTTTCTATTTAAACATTTGATAGAGCACCAGACT
CATTGATACATGATAAAGATATCAATTCAAATCATATGGATTACATATAT
GTGGCAATAGCTTTAAATTTAGACTATGACAAAAATATAGTCATATTCAC
AGAAATGGGCATTATTTTTAAAGTCCAGTTGAGGTTGACTGTATAGAGGA
CTTCTATAGAGGATATGCCTAAGCATGTGATCATATCTTGATGAAATCTT
GCTTTCGTAATTTGTTAGAGTGTAATCGTATGAAGGAAGAAAAGGACACT
GGCAAAGAAGGACAGCAAGAGGCGGCATAGTGAGAACGAGGAAGAGGTAT
GTATAATGCGCATAATTAAACTTTATTTCTTCTTTTGTAAACCGGCACTA
ATGCATTTCATTTCCTTGAACAAACTCAGGCTTTCATCAACTTTGCCAAA
GACTAAAAATCCTACTATAATGTTTACACCAGTACTCACGGTTCCACCAT
ATTTGTAAACTCCCAGGTATGACTACCTACATTCGTATCTCCCTGCCCCA
ATATTCCACCTTTTTCCCCCACCTGACCGGACGGCTTCTTGAAAAACCAC
ATCTCATTCTCAACCACTTCCCTCCTTATTTCCCTGTTTTCTTCCCTGTT
CGCCCCCGCTCCCCTCTTCGCAATACCTTGTCTTCATTTATATTTGGATA
CTCCTTTGCAACGTGTATTGTCTCCTCTAATTTCAACCGCCCCCTATCTC
CTTC
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCGCAGCATTCAGTGAGCCACCTCTGTAATCAGATATG
GGGGTGGGGTGCCTGTTGTCTGCCTAACTACAGCGATGGAGAGGATGTGC
ACAGCTTTGTATTACTGACGCCCTCAATCTGACCATTGAATCACTACTTC
CAGGTAGACTATCTCTGAATTGAATCGAACCGCCACACTATGACAGTCGT
CTATTTCTGCATTGACCGACCAGTTGCTGGATCTGCCCCTATATACTATC
ACTGTCTGCCCCACGTATTTTTTTTTTTTCCCGAACACCGGCGCGACTGA
AATGAAGACTTCCTTCTCTCCCGCTACAATGCTTCCCGTCATTCCCATTT
TACCCTACCTTTTACCTCCCCACCCCACATCCCGCCGTCGTCCTATACTT
ATAATTCCCGCGTTCCTTTGTTTGCCCCCTTCTCCCCCCCCCTCTTCCTT
ATCTTTTCAATCCTTAGTTCCCCCTTTCCCTCCCTTCTCTTTATTACACC
CTTTTTCTCCCCTTCCCCTTCCTATTTTCCTTTCTTTTCCTTCTCCCCTC
CTCCTCCCTCCTTTCTTTTTCCCTCCTTCTTATTTCTTCTCCCCCCTCCT
ACTCTTTCCCCCCTTTCCCCCTTCTCCCTTTTTTTCCCCCCCCCCTTCCC
TTTTTTTTCCCCTTCCTCCTTCCCCTTTTTCTTTTTCCCCTCCTTCCTCT
CCTTTTCCCTTTCTCTATTATTTTTCCTCCCCCCCCTTTTTCTCCTTTCT
TTTTTTCCTCCCTTCTCTTTTTCCCCCTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_g06.b1 MSMg01no469_g06.b1 CHROMAT_FILE:
MSMg01no469_g06.b1 PHD_FILE: MSMg01no469_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:57 2005
         (241 letters)



>mm_chr1_71289942_71290582
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaacatttgatagagcaccagactcattgatacatgataaagatatcaattcaaatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaacatttgatagagcaccagactcattgatacatgataaagatatcaattcaaatcat 382

                                                                       
Query: 61  atggattacatatatgtggcaatagctttaaatttagactatgacaaaaatatagtcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggattacatatatgtggcaatagctttaaatttagactatgacaaaaatatagtcata 322

                                                                       
Query: 121 ttcacagaaatgggcattatttttaaagtccagttgaggttgactgtatagaggacttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacagaaatgggcattatttttaaagtccagttgaggttgactgtatagaggacttct 262

                                                                       
Query: 181 atagaggatatgcctaagcatgtgatcatatcttgatgaaatcttgctttcgtaatttgt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaggatatgcctaagcatgtgatcatatcttgatgaaatcttgctttcgtaatttgt 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)