Query= MSMg01no469_l04.b1 MSMg01no469_l04.b1 CHROMAT_FILE:
MSMg01no469_l04.b1 PHD_FILE: MSMg01no469_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:22 2005
(587 letters)
>mm_chr1_95332025_95333011
Length = 987
Score = 1114 bits (576), Expect = 0.0
Identities = 585/588 (99%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 1 gcaccttcccccggaaactatcttgccagcaccatcatacattttgagattaactgctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gcaccttcccccggaaactatcttgccagcaccatcatacattttgagattaactgctga 259
Query: 61 taaaggtaggaaagctctttcttcctaagaatgtcagtcaacttaaaaaatagacatttt 120
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 260 taaaggtagggaagctctttcttcctaagaatgtcaatcaacttaaaaaatagacatttt 319
Query: 121 taatagataaaaccaccattttaacttttaatgaattttgctagatcatcagtgaaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taatagataaaaccaccattttaacttttaatgaattttgctagatcatcagtgaaccat 379
Query: 181 gaacaaagaataaataaagcagaatatactcctgtctattaaccaatctcagaatcggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaacaaagaataaataaagcagaatatactcctgtctattaaccaatctcagaatcggtt 439
Query: 241 cattaaaaaaaag-aaaaaaatctataatgacatgaatccttaccaaacaagctgaacac 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cattaaaaaaaagaaaaaaaatctataatgacatgaatccttaccaaacaagctgaacac 499
Query: 300 gaaagcaaacaagctcaaggctgggcatggtggcgtgcgcctttaatcccagcccttgag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaaagcaaacaagctcaaggctgggcatggtggcgtgcgcctttaatcccagcccttgag 559
Query: 360 ggtcagaagcaggaggactctttgaggccagctggtctacagactgaacttcaggaccgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggtcagaagcaggaggactctttgaggccagctggtctacagactgaacttcaggaccgc 619
Query: 420 caggtttacattgttgagactttgtctcaaaaacaaaacaaaacaaaacaaaatgacccc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caggtttacattgttgagactttgtctcaaaaacaaaacaaaacaaaacaaaatgacccc 679
Query: 480 ccaaaacaagaactaaagtaaccaagctcttggcacctaatcccagcccataagacatac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccaaaacaagaactaaagtaaccaagctcttggcacctaatcccagcccataagacatac 739
Query: 540 tgagggaaagcagaacaatcaaatactgactgtttacaaaccaacagc 587
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgagggaaagcagaacaatcaaatactgactgtttacaaaccaacagc 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_l04.g1 MSMg01no469_l04.g1 CHROMAT_FILE:
MSMg01no469_l04.g1 PHD_FILE: MSMg01no469_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:22 2005
(489 letters)
>mm_chr1_95390485_95391370
Length = 886
Score = 872 bits (451), Expect = 0.0
Identities = 479/490 (97%), Gaps = 5/490 (1%)
Strand = Plus / Minus
Query: 1 aaggcagtcaggagctacctgacaaaaatgctgggaactgaagtcaggtcctgtgtaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aaggcagtcaggagctacctgacaaaaatgctgggaactgaagtcaggtcctgtgtaaga 726
Query: 61 acagcaagttctcataatacctgggccatccctccaaccaccataaagaatagttaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 acagcaagttctcataatacctgggccatccctccaaccaccataaagaatagttaatga 666
Query: 121 agtgttttttttttcctattgcggtaaccgttcatgtcctttgaaatgtttttagctgtc 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agtg-tttttttttcctattgcggtaaccgttcatgtcctttgaaatgtttttagctgtc 607
Query: 181 ataaaattatgtttactttcttctaaaaaattttttttttactttaggcgtaggatatat 240
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 606 ataaaattatgtttactttcttctaaaaaaatttttttttactttaggtgtaggatatat 547
Query: 241 ttcaagttaatttgcaagtacaatttgcaaactagcctacatgtaccccatggaggacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttcaagttaatttgcaagtacaatttgcaaactagcctacatgtaccccatggaggacag 487
Query: 301 tatttgttcaaaacattccaactgtataattttgcttttggggtctcagtt-aaaaaaaa 359
| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 486 tctttgttcaaaacatcccaactgtataattttgcttttggggtctcagttaaaaaaaaa 427
Query: 360 aaatccaaaattctgtttttatttttgttttaacagtatactggatagtttgactataac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 426 aaatccaaaattctgtttttatttttgttttaacagtatactggatagtttgact---ac 370
Query: 420 actgtaaatggtcaaatttctctttctcctcctctggcaaggnctcattatgtagcccag 479
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 369 actgtaaatggtcaaatttctctttctcctcctctgtcaaggtctcattatgtagcccag 310
Query: 480 gcttgtctcc 489
||||||||||
Sbjct: 309 gcttgtctcc 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 886
Length adjustment: 10
Effective length of query: 479
Effective length of database: 876
Effective search space: 419604
Effective search space used: 419604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
