Query= MSMg01no469_n02.b1 MSMg01no469_n02.b1 CHROMAT_FILE:
MSMg01no469_n02.b1 PHD_FILE: MSMg01no469_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:31 2005
(550 letters)
>mm_chr1_69007902_69008852
Length = 951
Score = 1035 bits (535), Expect = 0.0
Identities = 544/549 (99%), Gaps = 5/549 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagtatta---atttgcagagtagggaagccagggataatgcagcaggcagcc 61
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagta--agcaatttgcagagtagggaagccagggataatgcagcaggcagcc 262
Query: 62 tttacaagcaaaacaaaacaccaaagaaagggagtaaaaaggctgacaaacaatggaagc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttacaagcaaaacaaaacaccaaagaaagggagtaaaaaggctgacaaacaatggaagc 322
Query: 122 tctcccagatgacacacacttacttttctctctttaaaatgtaacattcaaagagctgaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tctcccagatgacacacacttacttttctctctttaaaatgtaacattcaaagagctgaa 382
Query: 182 tcaacagcaaccctaatgagtcaaagttttgaatattaaggcaaattataccttcactat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcaacagcaaccctaatgagtcaaagttttgaatattaaggcaaattataccttcactat 442
Query: 242 tcagaagagggcaaaaagttttgaggctcaccaaaagaagctggaagtgaaagccaaggc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcagaagagggcaaaaagttttgaggctcaccaaaagaagctggaagtgaaagccaaggc 502
Query: 302 cactgacactggtggtggcagattaagctgtgagcagactctaaataaattccattctac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cactgacactggtggtggcagattaagctgtgagcagactctaaataaattccattctac 562
Query: 362 cccaaaccccaaatacactatttgagctactaagactgggtagcattctatgcatgctgc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cccaaaccccaaatacactatttgagctactaagactgggtagcattctatgcatgctgc 622
Query: 422 cagtaccctagccattcacttatttcaatggaagacagtgagggcagtcttctacttaga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cagtaccctagccattcacttatttcaatggaagacagtgagggcagtcttctacttaga 682
Query: 482 aagctgtgacagattagtatgtgtagttttgtatgtgtgcaaatgtgtgtatgcatgtgt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aagctgtgacagattagtatgtgtagttttgtatgtgtgcaaatgtgtgtatgcatgtgt 742
Query: 542 gtctgacta 550
|||||||||
Sbjct: 743 gtctgacta 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_n02.g1 MSMg01no469_n02.g1 CHROMAT_FILE:
MSMg01no469_n02.g1 PHD_FILE: MSMg01no469_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:31 2005
(439 letters)
>mm_chr1_69251876_69252714
Length = 839
Score = 690 bits (357), Expect = 0.0
Identities = 357/357 (100%)
Strand = Plus / Minus
Query: 1 tgctcaaaattcaacagtagtaagaggacattgggcaagtctgttgacaggtactgtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgctcaaaattcaacagtagtaagaggacattgggcaagtctgttgacaggtactgtgaa 298
Query: 61 caacaaaaaatgtttccagagcaacagtacagaaagctatttgtagggattttgtgaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 caacaaaaaatgtttccagagcaacagtacagaaagctatttgtagggattttgtgaggt 238
Query: 121 ctctgttaacctatcatttgtcttctataaaaaaatcttttgaacttgttccacagcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctctgttaacctatcatttgtcttctataaaaaaatcttttgaacttgttccacagcccc 178
Query: 181 ttcaagttctaaatttttaccccgccctgcatatgtaagaatataaactaggcttacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttcaagttctaaatttttaccccgccctgcatatgtaagaatataaactaggcttacaaa 118
Query: 241 tcaagcatttaatgaataatgaaaattttagaacaattcttaggattgtttagatgcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tcaagcatttaatgaataatgaaaattttagaacaattcttaggattgtttagatgcata 58
Query: 301 taatttttccactaattcaatatgggagcaaatttgcatattaatgaaatatataca 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 taatttttccactaattcaatatgggagcaaatttgcatattaatgaaatatataca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
