BAC Information

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BAC

Clone NameMSMg01-469N07
Chromosome1 (Build37)
Map Location 136,152,429 - 136,152,813
singlet/doubletsinglet
Overlap genenone
Upstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1
Downstream geneMyog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469N07.T7 (MSMg01no469_n07.b1)MSMg01-469N07.TJ (MSMg01no469_n07.g1)
ACCAG552974AG552975
length804818
length of high quality
(start - end)
249 (74 - 322)385 (80 - 464)
definitionCHROMAT_FILE: MSMg01no469_n07.b1 PHD_FILE: MSMg01no469_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:32 2005CHROMAT_FILE: MSMg01no469_n07.g1 PHD_FILE: MSMg01no469_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAAACGATCCGC
GGAATTCCAGACTTCCAGGAAGAGGGTCTTTTTCGAGACAGGGTTTCTCT
GTGTAGCCCTGGCTGTCCTGGAACTCACTCTGCAGACCAGGCTGGCCTCA
AACTTAGAAATTTGCCTGCCTCGGCCTCCTGAGTGCTGGGATTAAAGGCG
TGCACCACCAGGCCCGGTTTAGGGTGAGGGTCTTAAGCCCACACCCATAA
TGATACACCTATTGTGACCACACCACAAGGCCACACCTCCAAATAGTGCC
ACTTCCTGGGCCAAGCATATATTTTTCTATCACATCAGTGTAATAGCATT
AGGATCTCTTTATTATAAGCTCAGGCTTGGGCTCTCCTCCAACCCAACCC
TGACACAGCAGGATGGGAAGGTGGAGCAGCCTTGAACCCTCAGCAGGACA
AGGTTTTATTGGAAATAGAACGGAGGGAGGTAGGCTCTATCCCGGTTCGT
TTCCTAACTGCACGTTTACTGTCACCTTACCGTTTTTTGTTCCGAACCTA
TATTGCCCTTTCCCTCCGTCTGCCCCACACCTTTTTCCTTTTACCCCCTT
TTTATTCCTCCATCGTTTCCTTCCTTCCCCCCCTATTTTCTCTTTCTTTT
CACTCCTCCTTTTCCCCTTTTTTTCCCTGCCTTTCCTTTCGCCCCCCTCG
TCCCCCTCTTTCCCCATTTCCCCCCACTTATCCCTTATATCTTCTTATTT
TTCCTCGCCCCTTTTTTTCTCTTCCTTTCCTTTCTTCTCCCCCTCTCCTC
CCTG
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATTCCTGTGATCCCGGGCT
TGCAGCACCCACAGGTGTCTGACAATATCAACAAAAGACACTCAGGGAGC
AAAAGAAATCCCCTTCAGATACAGTGCCAAGAACCATGAGGATGTGATCC
AGCTGCCTGTCATTGTTACAACGTAAAAAGAGGAGGTGTTTATTTTCGCT
CATGTTTTCAGAGATTTGAGGCCGTGTATGCTCAGCCTGCTCACTTTGGA
GTTGCGACCTGGGACGAAGAGTGTGGTGTAGTGTGGTACAGTGTGCTGAG
GCAAAGCTCTTTATCACATGGCAGCCTGGGAGCAAAGGAGAAAGGAGCCA
GGATCTTAGGATCTTAATGGGTGTCTCTGTTAGGGGTATACCCCCAACAG
TTTAACTTCTTCTATTAAGCCCTGCTCTAAAAGGTTCAACAACATCCCCC
AAATCACCATCAGCCAGAGACCAAACCCTTCAATATACGAGCCTCTAGGG
GAAACACTTAATATTACCCCCCCATTAAGGGAGCTTACAGTTTTTTGATG
AAAAAAAAACATCCCTCCGGGCCTCGGCGAAACTCCATCCCTCCTTCTAG
GGGTCAGAATCCCTTTTCCCTTGATCCCCCTTTCTTTTCTTCCGCCGTTG
TGTTTTAATTCCCCGCATACTCCCCGCTTTCTTTTTCTTTGTTCTTCTCT
GCGTACATTTTTTATTTTTTTTCCTCTTCTCCCCCTCCCCCCCCCCTTTC
TTTCTTCACTGTCTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_n07.g1 MSMg01no469_n07.g1 CHROMAT_FILE:
MSMg01no469_n07.g1 PHD_FILE: MSMg01no469_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:33 2005
         (385 letters)



>mm_chr1_136152229_136153013
          Length = 785

 Score =  714 bits (369), Expect = 0.0
 Identities = 381/385 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattcctgtgatcccgggcttgcagcacccacaggtgtctgacaatatcaacaaaagac 60
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattcctgtgatcccgggctcacagcacccacaggtgtctgacaatatcaacaaaagac 260

                                                                       
Query: 61  actcagggagcaaaagaaatccccttcagatacagtgccaagaaccatgaggatgtgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcagggagcaaaagaaatccccttcagatacagtgccaagaaccatgaggatgtgatc 320

                                                                       
Query: 121 cagctgcctgtcattgttacaacgtaaaaagaggaggtgtttattttcgctcatgttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctgcctgtcattgttacaacgtaaaaagaggaggtgtttattttcgctcatgttttc 380

                                                                       
Query: 181 agagatttgaggccgtgtatgctcagcctgctcactttggagttgcgacctgggacgaag 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 agagatttgaggccgtgtatgctcagcctgctcactttggagttgcaacctgggacgaag 440

                                                                       
Query: 241 agtgtggtgtagtgtggtacagtgtgctgaggcaaagctctttatcacatggcagcctgg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtggtgcagtgtggtacagtgtgctgaggcaaagctctttatcacatggcagcctgg 500

                                                                       
Query: 301 gagcaaaggagaaaggagccaggatcttaggatcttaatgggtgtctctgttaggggtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcaaaggagaaaggagccaggatcttaggatcttaatgggtgtctctgttaggggtat 560

                                    
Query: 361 acccccaacagtttaacttcttcta 385
           |||||||||||||||||||||||||
Sbjct: 561 acccccaacagtttaacttcttcta 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)