BAC Information

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BAC

Clone NameMSMg01-469P11
Chromosome1 (Build37)
Map Location 24,671,115 - 24,671,370
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829
Downstream geneLmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469P11.T7 (MSMg01no469_p11.b1)MSMg01-469P11.TJ (MSMg01no469_p11.g1)
ACCAG553078AG553079
length764750
length of high quality
(start - end)
186 (116 - 301)256 (370 - 625)
definitionCHROMAT_FILE: MSMg01no469_p11.b1 PHD_FILE: MSMg01no469_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:43 2005CHROMAT_FILE: MSMg01no469_p11.g1 PHD_FILE: MSMg01no469_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATCGTTGCAAGTGCTTNNNNNNNNNNNTTCCAAAACGGTCTTCGGAAT
ACCATTTACTAAAAAGAGCCGCNTCCAAGNAACTGCGTTCTTCCCACTGC
ACAGGGATGTTACCGACCCCCAGTGGGCTGGGCCTTCCCAGATCAGTCAT
TAATTAAGAAAAATTAGACAGATTTGTCTATTGGCTAAACTTTTTTCCCA
AGAAAATAGTTTATTCAACTGTAAATCAGTATTTTTATATAATATTTTAA
ATATTACTTTTAATAGCATACTAAAATTACTAATTAATAATGTAAATTTG
GCAAATACTTTGTAATCAAGAAATCTCTGAAAACCTTCAGCCTTTCTCCT
ACATTTCCAGAATAGATTTCTTTAGCTTAGGACTTACAACTATCAGATAC
ATGCACTTTATACTGGATCCAACACAGCATGAGGAACAGTGAAGCAAAAT
TCTTTGCCACTGTATGGTGAGTACCACCAGGCGCTAAAGCGCTCCCGATC
TGCAGCACCTGGACCAGGACCACCTAGTCTGCACCATTAATGTCTAGAAA
CTCTGCAGTGCATTTTATCCCTGCTATCCCCCCAGGCAAGATTTTGGCGG
CCTATCATGTGCATTTTTTTCTCTGCAGATGGCCCCTCTTTTTCCCACCT
TGCCTTAAAACTTCCGCTTCCTCAAAATTCCTTTATTCCAAAATACTCAT
GTGCGCTCTCTTATGTCTACCACCTTTTTCCGGTCCATTCCTTTCATTCA
CCCCTCTTTTTTTG
CCGATGACAGTGGGTAGGNCTGGGGGNCGCCTTTTCAACAACTTTAGGTG
AACTATAGAATTACAAGAACAATTCAGCATAGCTCCATAAAAACCCCTAG
CTTCCGAGCCTCTTGGTCGACATCTGAAATCTCCTGTGTGGGATGCATGT
CAGTCCAGAGCTCGGTCATTAAACTACCTCGTGTAATTCCATCAAGATGG
TCCTTCGTGATTCTTTGGGTGCCCGCCGAATTGGGAATTGAGTGGGGGTT
TTTCCACTAGGTTCTATCAATGTCACAGTAAGTGAACATGCTGGTTAATG
AGTACAGTTCTGGATTATTTTTTTAAAATGCTGTTTTAATTAGATTCTTT
TTCTTAGTTCATCCCACACAGGTTCCTGAGAATGCCTTAAGTCATGTGGA
GTTTATTAAAAGGCTCCATGTGGGAGTAAGTAAAACAGACATTGTGCTCA
TTCATTGTAGCTTCCTGCCAATTTAAGAAATGCATCAAACCAGGCCCAGA
AGAAGAGCTAGACTCTTCCTTGGTAGAACTGAGTTTCATCAACTTCAGGA
ATGTAAAAAACCTATTCTTTCTTTCATCAATGTTCCACTCATAATATTTT
TATCCCTTATATAACTATCCTGTTGAATAACTTTCCATTTGTCTCCTTCT
CCTTTTTATTTTGTACCTCCTGCTTCTTTCTCCTGGTGTTGCATTACCCA
GGGACTCTGTCCTTTGCCTCTGCTGCAGATGCTGGCTTATGTCTTCTTCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_p11.g1 MSMg01no469_p11.g1 CHROMAT_FILE:
MSMg01no469_p11.g1 PHD_FILE: MSMg01no469_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:43 2005
         (256 letters)



>mm_chr1_24670915_24671570
          Length = 656

 Score =  456 bits (236), Expect = e-133
 Identities = 251/256 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttcctgagaatgccttaagtcatgtggagtttattaaaaggctccatgtgggagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggttcctgagaatgccttaagtcatgtggagtttattaaaaggctccatgtgggagtaa 260

                                                                       
Query: 61  gtaaaacagacattgtgctcattcattgtagcttcctgccaatttaagaaatgcatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaaacagacattgtgctcattcattgtagcttcctgccaatttaagaaatgcatcaaa 320

                                                                       
Query: 121 ccaggcccagaagaagagctagactcttccttggtagaactgagtttcatcaacttcagg 180
           |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ccaggcctggaagaagagctagactcttccttggtagaactgagtttcctcaacttcagg 380

                                                                       
Query: 181 aatgtaaaaaacctattctttctttcatcaatgttccactcataatatttttatccctta 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtgaaaaacctattctttctttcatcaatgttccactcataatatttttatccctta 440

                           
Query: 241 tataactatcctgttg 256
           ||||||| ||||||||
Sbjct: 441 tataactgtcctgttg 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)